Online citations, reference lists, and bibliographies.
Please confirm you are human
(Sign Up for free to never see this)
← Back to Search

Identification And Characterization Of Tn4653, A Transposon Covering The Toluene Transposon Tn4651 On TOL Plasmid PWW0

M. Tsuda, T. Iino
Published 2004 · Biology, Medicine

Save to my Library
Download PDF
Analyze on Scholarcy
Share
SummaryA Pseudomonas TOL plasmid pWW0 possesses toluene degradative pathway (xyl) genes. Unstable maintenance of a pWW0 derivative in Escherichia coli allowed us to identify two transposable elements each carrying all the xyl genes. One element corresponded to a 56 kb transposon, Tn4651, which we had previously characterized. The other element newly identified in this study was 70 kb long, and this element, designated Tn4653, completely included Tn4651. Genetic analysis of Tn4653 demonstrated that its transposition involves two steps, i.e. cointegrate formation and its subsequent resolution. The former step required a trans-acting factor, transposase, which was encoded in a 3.0 kb fragment at one end of Tn4653, and the latter step was inferred to be mediated by the factors necessary for resolution of the Tn4651-mediated cointegrate. The transposase functions were not interchangeable between the two transposons.
This paper references
10.1128/JB.120.1.416-423.1974
Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid.
P. Williams (1974)
10.1128/JB.167.2.455-461.1986
Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product.
S. Harayama (1986)
10.1099/00221287-131-5-1131
Plasmid fusions mediated by one end of TnA.
J. Heritage (1985)
10.1007/BF00325693
Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWWO
M. Tsuda (2004)
10.1016/S0022-2836(76)80124-6
Involvement of multiple translocating DNA segments and recombinational hotspots in the structural evolution of bacterial plasmids.
D. Kopecko (1976)
Physical and genetic analysis of the IncW group plasmids R 388 , Sa , and RTK
JM Ward (1982)
10.1016/0378-1119(87)90299-X
Plasmid Reference Center Registry of transposon(Tn) and insertion sequence (IS) allocations through December 1986.
E. Lederberg (1987)
10.1016/0147-619X(82)90005-1
Physical and genetic analysis of the Inc-W group plasmids R388, Sa, and R7K.
J. Ward (1982)
10.1007/BF00271202
Excision of the 40kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats
P. Meulien (2004)
10.1128/JB.134.3.1141-1156.1978
Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid.
A. C. Chang (1978)
10.1128/JB.135.1.278-280.1978
TOL is a broad-host-range plasmid.
S. Benson (1978)
10.1016/0076-6879(83)01027-7
Uses of the transposon gamma delta in the analysis of cloned genes.
M. Guyer (1983)
10.1016/B978-0-12-638680-6.50009-0
CHAPTER 5 – Tn3 and Its Relatives
F. Heffron (1983)
10.1016/0378-1119(77)90000-2
Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
F. Bolivar (1977)
10.1007/978-1-4613-2447-8_50
Analysis and Manipulation of Plasmid-Encoded Pathways for the Catabolism of Aromatic Compounds by Soil Bacteria
Kenneth N. Timmis (1985)
10.1016/0378-1119(82)90015-4
The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
J. Vieira (1982)
Pfihler A (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria
R Simon (1983)
10.1128/MMBR.40.1.168-189.1976
Uniform nomenclature for bacterial plasmids: a proposal.
R. Novick (1976)
10.1016/0092-8674(76)90055-6
A colony bank containing synthetic CoI EI hybrid plasmids representative of the entire E. coli genome
L. Clarke (1976)
Molecular Cloning: A Laboratory Manual
J. Sambrook (1983)
Tn3 and its relatives. In: Shapiro (ed) Mobile genetic elements
F Heffron (1983)
10.1016/0378-1119(83)90112-9
Revised sequence of the tetracycline-resistance gene of pBR322.
K. Peden (1983)
10.1016/0378-1119(81)90080-9
Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas.
M. Bagdasarian (1981)
10.1128/JB.151.1.222-228.1982
Genetic and molecular characterization of Tn21, a multiple resistance transposon from R100.1.
F. de la Cruz (1982)
10.1128/JB.158.3.866-871.1984
Detection and characterization of Tn2501, a transposon included within the lactose transposon Tn951.
T. Michiels (1984)
10.1007/BF00332760
Replicon fusion mediated by a single-ended derivative of transposon Tn1721
S. Mötsch (2004)
Physical mapping of TOL plasmids pWWO and pND2 and various R plasmid-TOL derivatives from Pseudomonas spp.
P. Lehrbach (1982)
Construction and characterization of new cloning vehicles II. A multipurpose cloning system. Gene
F Bolivar (1977)
10.1038/NBT1183-784
A Broad Host Range Mobilization System for In Vivo Genetic Engineering: Transposon Mutagenesis in Gram Negative Bacteria
R. Simon (1983)
A colony bank containing synthetic ColE1 hybrid plasmids representative of the entire E. coli
L Clarke (1976)
10.1007/BF00332761
Plasmids containing one inverted repeat of Tn21 can fuse with other plasmids in the presence of Tn21 transposase
P. Avila (2004)



This paper is referenced by
10.1007/BF00696460
The evolution of pathways for aromatic hydrocarbon oxidation inPseudomonas
P. Williams (2004)
Regulation of transcription from the fusion promoters generated by transposition of Tn4652 into the upstream region of pheBA operon in Pseudomonas putida
R. Teras (2005)
10.1007/BF00115749
Transposon and spontaneous deletion mutants of plasmid-borne genes encoding polycyclic aromatic hydrocarbon degradation by a strain of Pseudomonas fluorescens
J. Foght (2004)
10.1128/AEM.02359-16
Host Range of the Conjugative Transfer System of IncP-9 Naphthalene-Catabolic Plasmid NAH7 and Characterization of Its oriT Region and Relaxase
K. Kishida (2016)
Stress-induced transposition of Tn4652 in Pseudomonas putida
H. Ilves (2006)
10.1007/978-1-4419-9086-0_6
Genomics of Catabolic Plasmids
P. Williams (2004)
Site-Specific Recombination System Encoded by Toluene Catabolic Transposon Tn 4651
H. Genka (2002)
10.1023/A:1025079027730
Carbazole/dioxin-degrading car gene cluster is located on the chromosome of Pseudomonas stutzeri strain OM1 in a form different from the simple transposition of Tn4676
M. Shintani (2004)
10.1264/JSME2.ME10155
The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms.
M. Shintani (2010)
10.1007/978-4-431-54520-0_7
Conjugative Elements: Host Chromosome Function Modifiers
M. Shintani (2014)
10.1007/BF00406565
Genetic transfer of lithoautotrophy mediated by a plasmid-cointegrate from Pseudomonas facilis
J. Warrelmann (2004)
10.1134/S0003683808020014
Organization of metabolic pathways and molecular-genetic mechanisms of xenobiotic degradation in microorganisms: A review
V. G. Khomenkov (2008)
10.1007/BF01576736
Review of the literature
R. A.M. (1999)
10.1007/978-1-4419-9086-0_9
Transposition and Other Mutational Processes in Pseudomonas
M. Kivisaar (2004)
Bacterial community adaptation to chlorinated pollutant challenge: implications for ready biodegradation testing.
M. Leggett (2010)
10.1271/bbb.110620
Structural and Molecular Genetic Analyses of the Bacterial Carbazole Degradation System
H. Nojiri (2012)
10.1007/s00253-003-1509-y
Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity
H. Nojiri (2003)
10.1016/J.JMB.2007.02.098
Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements.
H. Yano (2007)
10.1016/S0022-2836(02)01400-6
Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676.
K. Maeda (2003)
10.1002/0471263397.ENV011
Evolution of Metabolic Pathways for Degradation of Environmental Pollutants
V. Meer (2003)
10.1007/978-4-431-54520-0_5
Mobile Catabolic Genetic Elements in Pseudomonads
M. Tsuda (2014)
8. References Aelion Cm, Bradley Pm. 1991. Aerobic Biodegradation Potential of Subsurface Microorganisms from a Jet Fuel-contaminated Aquifer. Appl Environ Microbiol 57:57-63
A. Am ()
TOL Plasmid pWW 53 a Set of Toluene-Degrading Genes from , a Novel Class II Transposon Carrying 4656 Identification and Characterization of Tn
M. Tsuda (2001)
10.1128/JB.184.17.4757-4766.2002
Site-specific recombination system encoded by toluene catabolic transposon Tn4651.
H. Genka (2002)
10.1007/s00253-004-1778-0
Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria
M. Shintani (2004)
10.1128/JB.184.23.6572-6580.2002
A third transposable element, ISPpu12, from the toluene-xylene catabolic plasmid pWW0 of Pseudomonas putida mt-2.
P. Williams (2002)
10.1007/0-387-28881-3_7
Evolution of Catabolic Pathways in Pseudomonas Through Gene Transfer
J. R. Meer (2006)
10.1007/978-3-540-85467-8_3
Catabolic Plasmids Involved in the Degradation of Polycyclic Aromatic Hydrocarbons and Heteroaromatic Compounds
H. Nojiri (2009)
10.1007/BF00163150
Codon usage patterns suggest independent evolution of two catabolic operons on toluene-degradative plasmid TOL pWW0 of Pseudomonas putida
S. Harayama (2004)
10.1016/S0065-2164(08)00401-2
Diversity of microbial toluene degradation pathways.
R. Parales (2008)
10.1061/9780784410141.CH12
Molecular Biology Techniques for CoEEC Degrading Organisms
B. R. Subramanian (2013)
10.1128/JB.184.23.6581-6591.2002
Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing.
A. Weightman (2002)
See more
Semantic Scholar Logo Some data provided by SemanticScholar