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Long-Term Rice And Green Manure Rotation Alters The Endophytic Bacterial Communities Of The Rice Root

Xiao-Xia Zhang, Ju-sheng Gao, Yan-Hua Cao, Xiao-tong Ma, Ji-Zheng He
Published 2013 · Medicine, Biology
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This study focuses on the effects of long-term rice rotated with milk vetch being as green manure on the composition of bacteria in rice roots. The endophytic bacterial communities in rice roots of the rice–rice–milk vetch (R-R-MV) and the rice–rice–winter fallow (R-R-WF) crop rotations with a 28-year research history were investigated using combined culture-dependent and culture-independent methods. It was found that the endophytic bacterial population in rice roots with the green manure was significantly higher than that of without it. There were 169 and 77 strains of endophytic bacteria that were isolated from rice roots of the R-R-MV and the R-R-WF, respectively. The 16S rRNA gene analysis shows that the 77 R-R-WF bacteria belong to 15 species of 14 genera while the other 169 R-R-MV bacteria belong to 21 species of 19 genera, in which Herbaspirillum and Cedecea were two mutually dominant populations and Burkholderia, Pseudomonas, Sphingomonas, and Pantoea accounted for large proportions of the endophytic bacteria in rice roots through R-R-MV rotation. The analysis of 16S rDNA clone libraries showed that the Shannon–Weaver diversity index of endophytic bacteria in R-R-MV approximates that in R-R-WF rotation, whereas the richness indexes of Chao 1 and ACE in R-R-MV rotation system were significantly higher than those in R-R-WF rotation. The diversity of endophytic bacteria was richer in R-R-MV. Both the culture-dependent and the culture-independent method revealed significant effect of long-term different tillage systems on the microbial community.
This paper references
Green Manure Alters Rice Endophytic Bacteria
Microbial and biochemical soil quality indicators and their potential for differentiating areas under contrasting agricultural management regimes
G. Bending (2004)
Legume-based cropping systems have reduced carbon and nitrogen losses
L. Drinkwater (1998)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss (2009)
Greenhouse gases in intensive agriculture: contributions of individual gases to the radiative forcing of the atmosphere
Robertson (2000)
The Effect of Green Manuring on the Physical Properties of Temperate-Area Soils
R. Macrae (1985)
Endophytic Herbaspirillum seropedicae expresses nif genes in gramineous plants.
Lauren D B Roncato-Maccari (2003)
Effects of long-term rotation of rice, rice and milk vetch on growth and yield in rice
JS Gao (2008)
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.
Ok-Sun Kim (2012)
Effects of Long-term Winter Planting-green Manure on Microbial Properties and Enzyme Activities in Reddish Paddy Soil
Liao Yu-lin (2011)
Are microbes at the root of a solution to world food production? Rational exploitation of interactions between microbes and plants can help to transform agriculture.
J. Morrissey (2004)
Endophytic microorganisms from coffee tissues as plant growth promoters and biocontrol agents of coffee leaf rust
H. S. A. Silva (2012)
Analysis of endophytic bacterial communities of potato by plating and denaturing gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments
P. Garbeva (2006)
Bacterial Biodiversity-Ecosystem Functioning Relations Are Modified by Environmental Complexity
Silke Langenheder (2010)
Effects of different green manures on soil biological properties and maize yield.
M. Tejada (2008)
Isolation and molecular characterization of thiosulfate-oxidizing bacteria from an Italian rice field soil.
Andrea Graff (2003)
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
Koichiro Tamura (2011)
16 S / 23 S rRNA sequencing
DJ Lane (1991)
16S/23S rRNA sequencing
D. J. Lane (1991)
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
J. Thompson (1997)
Effects of long-term double-rice and green manure rotation on rice yield and soil organic matter in paddy field
Zhang Wen-ju (2011)
Phylogenetic Analysis of Microbial Diversity in the Rhizoplane of Oilseed Rape (Brassica napus cv. Westar) Employing Cultivation-Dependent and Cultivation-Independent Approaches
O. Kaiser (2001)
Using ecological diversity measures with bacterial communities.
Tom C J Hill (2003)
Two bacterial entophytes eliciting both plant growth promotion and plant defense on pepper (Capsicum annuum L.).
Seung Hoon Kang (2007)
Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization
Stéphane Compant (2010)
Endophytic Bacterial Diversity in Rice (Oryza sativa L.) Roots Estimated by 16S rDNA Sequence Analysis
L. Sun (2007)
Characterization of cultivable putative endophytic plant growth promoting bacteria associated with maize cultivars (Zea mays L.) and their inoculation effects in vitro
Adriana Montañez (2012)
Characterization of soil microbial communities under different potato cropping systems by microbial population dynamics, substrate utilization, and fatty acid profiles ☆
R. Larkin (2003)
Influence of organic and mineral amendments on microbial soil properties and processes
C. Stark (2007)
Endophytic Bacteria in the Rice Plant
IRONOBU (2008)
Endophytic Colonization and In Planta Nitrogen Fixation by a Herbaspirillum sp. Isolated from Wild Rice Species
A. El-beltagy (2001)
Contribution of soil-borne bacteria to the rotation effect in corn
R. F. Turco (2008)
I. Good (1953)
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
M. Chelius (2001)
Effects of continuous cucumber cropping and alternative rotations under protected cultivation on soil microbial community diversity
Huaiying Yao (2006)
Effects of long-term winter planting-green manure on microbial properties and enzyme activities in reddish paddy soil. Soils
ZP Yang (2011)
Influence of organic fertilization on the number of culturable diazotrophic endophytic bacteria isolated from sugarcane
Ricardo Pariona-Llanos (2010)
Properties of bacterial endophytes and their proposed role in plant growth.
P. Hardoim (2008)
Developing disease-suppressive soils through crop rotation and tillage management practices
R. Peters (2003)

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Phosphorus Input Alters the Assembly of Rice (Oryza sativa L.) Root-Associated Communities
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Response of leaf endophytic bacterial community to elevated CO2 at different growth stages of rice plant
Gaidi Ren (2015)
Endophytic bacterial community of rice (Oryza sativa L.) from coastal saline zone of West Bengal: 16S rRNA gene based metagenomics approach
Pranamita Kunda (2018)
Response of soil, leaf endosphere and phyllosphere bacterial communities to elevated CO2 and soil temperature in a rice paddy
Gaidi Ren (2015)
Microbial Community Characteristics in Industrial Matured Chinese paocai, a Fermented Vegetable Food, from Different Factories
Huipeng Liang (2016)
Greenhouse gas emissions from a rice-rice-green manure cropping system in South China
Abdulkareem Raheem (2019)
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