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Genome Sequencing Of Rumen Bacteria And Archaea And Its Application To Methane Mitigation Strategies.
S. Leahy, W. Kelly, R. Ronimus, N. Wedlock, E. Altermann, G. Attwood
Published 2013 · Medicine, Biology
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Ruminant-derived methane (CH4), a potent greenhouse gas, is a consequence of microbial fermentation in the digestive tract of livestock. Development of mitigation strategies to reduce CH4 emissions from farmed animals is currently the subject of both scientific and environmental interest. Methanogens are the sole producers of ruminant CH4, and therefore CH4 abatement strategies can either target the methanogens themselves or target the other members of the rumen microbial community that produce substrates necessary for methanogenesis. Understanding the relationship that methanogens have with other rumen microbes is crucial when considering CH4 mitigation strategies for ruminant livestock. Genome sequencing of rumen microbes is an important tool to improve our knowledge of the processes that underpin those relationships. Currently, several rumen bacterial and archaeal genome projects are either complete or underway. Genome sequencing is providing information directly applicable to CH4 mitigation strategies based on vaccine and small molecule inhibitor approaches. In addition, genome sequencing is contributing information relevant to other CH4 mitigation strategies. These include the selection and breeding of low CH4-emitting animals through the interpretation of large-scale DNA and RNA sequencing studies and the modification of other microbial groups within the rumen, thereby changing the dynamics of microbial fermentation.
This paper references
Bacterial species of the rumen.
M. Bryant (1959)
Rumen methanogenic bacteria
MP Bryant (1965)
Formate as an intermediate in the bovine rumen fermentation.
R. Hungate (1970)
SOME EFFECTS OF METHANE INHIBITION IN RUMINANTS (STEERS)
E. D. Johnson (1972)
New inhibitors of methane production by rumen micro-organisms. Experiments with animals and other practical possibilities.
J. Czerkawski (1975)
Biotechnology in animal feeds and animal feeding.
R. Wallace (1995)
Inhibiting methane production in Brahman cattle by dietary supplementation with a novel compound and the effects on growth
G. Mccrabb (1997)
Ruminal acetogens and their potential to lower ruminant methane emissions
K. Joblin (1999)
Complete genome sequence and analysis of Wolinella succinogenes
Claudia Baar (2003)
Rumen function and digestion parameters associated with differences between sheep in methane emissions when fed chaffed lucerne hay
C. Pinares-Patiño (2003)
Reducing methane emissions in sheep by immunization against rumen methanogens.
A. Wright (2004)
Hydrogen as an intermediate in the rumen fermentation
R. Hungate (2004)
The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens
S. Hong (2004)
Establishment and Development of Ruminal Hydrogenotrophs in Methanogen-Free Lambs
G. Fonty (2007)
Methanobrevibacter millerae sp. nov. and Methanobrevibacter olleyae sp. nov., methanogens from the ovine and bovine rumen that can utilize formate for growth.
S. Rea (2007)
Feed additives and other interventions for decreasing methane emissions
C. V. Nevel (2007)
Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency.
L. L. Guan (2008)
Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea
Y. Liu (2008)
Redirecting rumen fermentation to reduce methanogenesis
T. McAllister (2008)
Structure of the Archaeal Community of the Rumen
P. Janssen (2008)
Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies
M. Zhou (2009)
Enteric fermentation and ruminant eructation: the role (and control?) of methane in the climate change debate
A. Thorpe (2009)
Cultivation of Methanogens under Low-Hydrogen Conditions by Using the Coculture Method
S. Sakai (2009)
Diversity and Strain Specificity of Plant Cell Wall Degrading Enzymes Revealed by the Draft Genome of Ruminococcus flavefaciens FD-1
Margret E. Berg Miller (2009)
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T)
R. Pukall (2009)
Transcriptomic Analyses of Xylan Degradation by Prevotella bryantii and Insights into Energy Acquisition by Xylanolytic Bacteroidetes*
D. Dodd (2010)
Direct-fed microbials for ruminant animals.
Ja Kyeom Seo (2010)
The Genome Sequence of the Rumen Methanogen Methanobrevibacter ruminantium Reveals New Possibilities for Controlling Ruminant Methane Emissions
S. Leahy (2010)
Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche
Janaki Purushe (2010)
A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production
J. McKinlay (2010)
Presence of Novel, Potentially Homoacetogenic Bacteria in the Rumen as Determined by Analysis of Formyltetrahydrofolate Synthetase Sequences from Ruminants
G. Henderson (2010)
Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis
M. Zhou (2010)
Methane mitigation in ruminants: from microbe to the farm scale.
C. Martin (2010)
Evolutionary adaptations of ruminants and their potential relevance for modern production systems.
M. Clauss (2010)
Influence of the Composition of the Cellulolytic Flora on the Development of Hydrogenotrophic Microorganisms, Hydrogen Utilization, and Methane Production in the Rumens of Gnotobiotically Reared Lambs
F. Chaucheyras-Durand (2010)
Methanogens: Methane Producers of the Rumen and Mitigation Strategies
S. E. Hook (2010)
The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316T Highlights Adaptation to a Polysaccharide-Rich Environment
W. Kelly (2010)
Molecular Monitoring and Isolation of Previously Uncultured Bacterial Strains from the Sheep Rumen
S. Koike (2010)
Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts
B. Forde (2011)
Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7
G. Suen (2011)
Does the complexity of the rumen microbial ecology preclude methane mitigation
A. Wright (2011)
Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
M. Hess (2011)
Status of the phylogenetic diversity census of ruminal microbiomes.
M. Kim (2011)
Repeatability of methane emissions from sheep
C. Pinares-Patiño (2011)
Strategies to reduce methane emissions from farmed ruminants grazing on pasture.
B. Buddle (2011)
Isolation of previously uncultured rumen bacteria by dilution to extinction using a new liquid culture medium.
Nikki Kenters (2011)
The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist
G. Suen (2011)
Is rumen retention time implicated in sheep differences in methane emission
C. Pinares-Patiño (2011)
Developing vaccines to control protozoan parasites in ruminants: dead or alive?
E. Innes (2011)
Genome Sequence of the Ruminal Bacterium Megasphaera elsdenii
Hans Marx (2011)
Ruminant Nutrition Symposium: Productivity, digestion, and health responses to hindgut acidosis in ruminants.
T. Gressley (2011)
Impact of Feed Efficiency and Diet on Adaptive Variations in the Bacterial Community in the Rumen Fluid of Cattle
E. Hernandez-Sanabria (2011)
Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)
S. Spring (2012)
Methanogen Colonisation Does Not Significantly Alter Acetogen Diversity in Lambs Isolated 17 h After Birth and Raised Aseptically
E. Gagen (2012)
Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen
D. Fouts (2012)
“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens
Kristina Paul (2012)
Genome Sequence of Oscillibacter ruminantium Strain GH1, Isolated from Rumen of Korean Native Cattle
Gunhye Lee (2012)
Structural vaccinology starts to deliver
P. Dormitzer (2012)
Commission on Genetic Resources for Food and Agriculture. Micro-organisms and ruminant digestion: State of knowledge, trends and future prospects
C. McSweeney (2012)
Effect of Phenotypic Residual Feed Intake and Dietary Forage Content on the Rumen Microbial Community of Beef Cattle
C. Carberry (2012)
Draft Genome Sequence of Treponema sp. Strain JC4, a Novel Spirochete Isolated from the Bovine Rumen
C. Rosewarne (2012)
Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome.
Margret E. Berg Miller (2012)
Rumen microbial (meta)genomics and its application to ruminant production.
D. Morgavi (2013)
Effect of media composition, including gelling agents, on isolation of previously uncultured rumen bacteria
T. Nyonyo (2013)
Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL)
S. Spring (2013)
Diversity of gut methanogens in herbivorous animals.
B. St-Pierre (2013)
Nutritional and host effects on methanogenesis in the grazing ruminant.
J. Clark (2013)
Genome Sequence of Methanobrevibacter sp. Strain JH1, Isolated from Rumen of Korean Native Cattle
Jong-Hwan Lee (2013)
Progress in the development of vaccines against rumen methanogens.
D. N. Wedlock (2013)
Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL T )
Ruminococcus albus 7
Genome sequencing of rumen bacteria and archaea 243 https:/www.cambridge.org/core/terms. https://doi
This paper is referenced by
Holstein and Jersey Steers Differ in Rumen Microbiota and Enteric Methane Emissions Even Fed the Same Total Mixed Ration
Mahfuzul Islam (2021)
Rumen Virus Populations: Technological Advances Enhancing Current Understanding
R. Gilbert (2020)
Review: Fifty years of research on rumen methanogenesis: lessons learned and future challenges for mitigation.
K. A. Beauchemin (2020)
Fecal and Ruminal Microbiome Components Associated With Methane Emission in Beef Cattle.
B. G. Andrade (2020)
Comparative analysis of the metabolically active microbial communities in the rumen of dromedary camels under different feeding systems using total rRNA sequencing
Alaa E Rabee (2020)
The structure of microbial populations in Nelore GIT reveals inter-dependency of methanogens in feces and rumen
B. G. Andrade (2020)
A comparative study on rumen ecology of water buffalo and cattle calves under similar feeding regime
Qiyan Wang (2020)
Dietary mitigation of enteric methane emissions from ruminants: A review of plant tannin mitigation options☆
B. Min (2020)
Are Vaccines the Solution for Methane Emissions from Ruminants? A Systematic Review
Victoria Baca-González (2020)
Effects of different molecular weights of chitosan on methane production and bacterial community structure in vitro
J. Tong (2020)
Impact of inulin and yeast containing synbiotic on calves’ productivity and greenhouse gas production
S. Jonova (2020)
MiSeq sequencing reveals the effects of grape seed procyanidin on rumen archaeal communities 1 in vitro 2
Hua Zhang (2019)
Impact of Fe and Ni Addition on the VFAs’ Generation and Process Stability of Anaerobic Fermentation Containing Cd
H. Zhang (2019)
PCR and qPCR-based applications in rumen microbiology research: a review
I. Malgwi (2019)
Illumina MiSeq sequencing reveals the effects of grape seed procyanidin on rumen archaeal communities in vitro
Hua Zhang (2019)
Process Analysis of Anaerobic Fermentation Exposure to Metal Mixtures
Yonglan Tian (2019)
The rumen microbiome: a crucial consideration when optimising milk and meat production and nitrogen utilisation efficiency
C. Matthews (2019)
Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows
Y. Ramayo-Caldas (2019)
Microbiome digital signature of MCR genes – an in silico approach to study the diversity of methanogenic population in laboratory-developed and pilot-scale anaerobic digesters
K. Ponni Keerthana (2019)
Composition of bacterial and archaeal communities in the rumen of dromedary camel using cDNA-amplicon sequencing
Alaa E Rabee (2019)
Advanced estimation and mitigation strategies: a cumulative approach to enteric methane abatement from ruminants
M. Islam (2019)
The microbial zonation of SRB and soNRB enhanced the performance of SR-DSR process under the micro-aerobic condition.
Xue-ting Wang (2019)
Mitigating greenhouse gas emissions from New Zealand pasture-based livestock farm systems
S. Leahy (2019)
Scotland's Rural College Effects and mode of action of chitosan and ivy fruit saponins on the microbiome, fermentation and methanogenesis in the rumen simulation technique Belanche,
A. Belanche (2019)
Comparative Analysis of the Microbiota Between Sheep Rumen and Rabbit Cecum Provides New Insight Into Their Differential Methane Production
Lan Mi (2018)
Comparative Genomic Analysis of Members of the Genera Methanosphaera and Methanobrevibacter Reveals Distinct Clades with Specific Potential Metabolic Functions
Anja Poehlein (2018)
Interrelations between the rumen microbiota and production, behavioral, rumen fermentation, metabolic, and immunological attributes of dairy cows.
M. Schären (2018)
Shifts of Hydrogen Metabolism From Methanogenesis to Propionate Production in Response to Replacement of Forage Fiber With Non-forage Fiber Sources in Diets in vitro
K. Wang (2018)
Application of MootralTM Reduces Methane Production by Altering the Archaea Community in the Rumen Simulation Technique
M. Eger (2018)
Probiotics and Prebiotics: An Overview on Recent Trends
G. Zoumpopoulou (2018)
Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review
P. Chellapandi (2018)
USE OF NATURAL ADDITIVES AS FEED SUPPLEMENTS TO REDUCE THE METHANE EMISSION FROM RUMINANTS
Giulia Rossi (2018)See more