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DNAzymes In Environmental Sensing

R. Vannela, P. Adriaens
Published 2006 · Chemistry

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10.1038/nbt0202-171
Molecular beacons for detecting DNA binding proteins
T. Heyduk (2002)
10.1038/14872
Training ribozymes to switch
K. A. Marshall (1999)
10.2210/pdb1tn1/pdb
Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA.
R. Brown (1985)
The RNA folding problem, in The RNA World
P. Moore (1999)
10.1021/JA992630A
A Selective and Sensitive Fluoroionophore for HgII, AgI, and CuII with Virtually Decoupled Fluorophore and Receptor Units
K. Rurack (2000)
10.1093/emboj/17.11.3188
Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches
B. Felden (1998)
10.1016/S1367-5931(97)80106-8
Structural analysis of nucleic acid aptamers.
D. Patel (1997)
10.1007/S00216-001-1189-3
Aptasensors – the future of biosensing?
C. O'Sullivan (2002)
DNA catalysts for bioorganic chemistry
S Silverman (2004)
DNA catalysts for C-C addition
R. Vannela (2005)
10.1016/S1389-0352(99)00005-7
In vitro selection of nucleic acids for diagnostic applications.
J. Hesselberth (2000)
10.1006/ABIO.2001.5169
Aptamer beacons for the direct detection of proteins.
N. Hamaguchi (2001)
10.1038/5236
In vitro selection of an allosteric ribozyme that transduces analytes to amplicons
M. P. Robertson (1999)
10.1016/J.SBI.2005.05.002
Structure, folding and mechanisms of ribozymes.
D. Lilley (2005)
10.1021/JA993688S
RNA cleavage by a DNA enzyme with extended chemical functionality.
S. Santoro (2000)
Surface-enhanced raman gene
T. Vo-Dinh (1996)
Structural and functional characterization of potent antithrombic oligonucleotides possessing both qudruplex and duplex motifs, Biochemistry
R. F. Macaya (1995)
10.1021/BI00013A041
Structural and functional characterization of potent antithrombotic oligonucleotides possessing both quadruplex and duplex motifs.
R. Macaya (1995)
10.1002/1439-7633(20010601)2:6<411::AID-CBIC411>3.0.CO;2-I
Catalytic Molecular Beacons
M. Stojanovic (2001)
10.1088/0370-1328/73/1/307
Complete Absorption of Light by Thin Metal Films
T. Turbadar (1959)
10.1172/JCI11325
Developing aptamers into therapeutics.
R. White (2000)
10.1021/JA034775U
A colorimetric lead biosensor using DNAzyme-directed assembly of gold nanoparticles.
J. Liu (2003)
10.1038/35003155
DNA computing on surfaces
Q. Liu (2000)
In vitro selection of signaling
S. Jhaveri (2000)
10.1046/j.1365-2443.2000.00331.x
Molecular beacon aptamer fluoresces in the presence of Tat protein of HIV‐1
Rika Yamamoto (2000)
10.1146/ANNUREV.BI.64.070195.002251
Structure and activities of group II introns.
F. Michel (1995)
10.1093/CLINCHEM/46.5.625
DzyNA-PCR: use of DNAzymes to detect and quantify nucleic acid sequences in a real-time fluorescent format.
A. Todd (2000)
10.1021/ja0022223
Fluorescent Sensors Based on Aptamer Self-Assembly.
M. Stojanovic (2000)
10.1016/S1074-5521(97)90244-1
Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme.
C. R. Geyer (1997)
10.1515/ZNA-1968-1247
Notizen: Radiative Decay of Non Radiative Surface Plasmons Excited by Light
E. Kretschmann (1968)
10.1016/S0048-9697(01)00962-7
Assessment of bioavailable arsenic and copper in soils and sediments from the Antofagasta region of northern Chile.
Helen C Flynn (2002)
10.1016/1074-5521(94)90014-0
A DNA enzyme that cleaves RNA.
R. Breaker (1994)
10.1021/AR960167Q
Nucleic acid aptamers-from selection in vitro to applications in vivo.
M. Famulok (2000)
10.1006/ABIO.2000.4595
A fiber-optic microarray biosensor using aptamers as receptors.
M. Lee (2000)
Selecting nucleic acids for biosensor
M. Rajendran (2002)
10.1017/9781108377737.008
The RNA Folding Problem
P. Moore (1999)
10.1006/JMBI.1997.1036
Characterization and divalent metal-ion dependence of in vitro selected deoxyribozymes which cleave DNA/RNA chimeric oligonucleotides.
D. Faulhammer (1997)
10.1146/ANNUREV.BI.61.070192.003233
Small catalytic RNAs.
R. Symons (1992)
Complete adsorption of light by thin metal films
R. Turbadar (1959)
Recovering sustainable water from wastewater.
A. Levine (2004)
10.1126/SCIENCE.277.5329.1078
Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles.
R. Elghanian (1997)
10.1021/AC020009E
Optical imaging fiber-based single live cell arrays: a high-density cell assay platform.
I. Biran (2002)
10.1073/PNAS.94.9.4262
A general purpose RNA-cleaving DNA enzyme.
S. Santoro (1997)
10.2174/1386207023330246
Selecting nucleic acids for biosensor applications.
Manjula T. Rajendran (2002)
10.1006/JMBI.1994.1105
Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG).
P. Schultze (1994)
10.1073/PNAS.89.3.918
Function of specific 2'-hydroxyl groups of guanosines in a hammerhead ribozyme probed by 2' modifications.
D. Williams (1992)
10.1016/1074-5521(95)90028-4
A DNA enzyme with Mg(2+)-dependent RNA phosphoesterase activity.
R. Breaker (1995)
10.1016/S0003-2670(01)00963-1
Use of bioluminescent bacterial sensors as an alternative method for measuring heavy metals in soil extracts
T. Petänen (2002)
10.1146/ANNUREV.BIOCHEM.68.1.611
In vitro selection of functional nucleic acids.
D. Wilson (1999)
10.1093/NAR/28.2.481
In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme.
J Li (2000)
10.1021/AC991434J
Using molecular beacons to probe molecular interactions between lactate dehydrogenase and single-stranded DNA.
X. Fang (2000)
10.1016/S0958-1669(02)00281-1
Engineered allosteric ribozymes as biosensor components.
R. Breaker (2002)
10.1093/nar/gki930
In vitro selection, characterization, and application of deoxyribozymes that cleave RNA
S. Silverman (2005)
10.1093/NAR/24.4.702
Use of a high affinity DNA ligand in flow cytometry.
K. A. Davis (1996)
10.1021/JM00036A001
Applications of combinatorial technologies to drug discovery. 2. Combinatorial organic synthesis, library screening strategies, and future directions.
E. M. Gordon (1994)
10.1080/07391102.1990.10507825
Four-stranded nucleic acid structures 25 years later: from guanosine gels to telomer DNA.
W. Guschlbauer (1990)
10.1080/07328319908044782
New techniques for the rapid characterization of oligonucleotides by mass spectrometry.
J. McCloskey (1999)
Optical Sensors for the Determination of Heavy Metal Ions
T. Mayr (2002)
10.1002/CHIN.199710189
Ordered Nanowell Arrays.
P. Pantano (1997)
10.1023/A:1026696330245
Combinatorial Chemistry of Nucleic Acids: SELEX
A. Kopylov (2004)
Dissecting protein:protein interactions between transcription factors with an RNA aptamer.
Y. Tian (1995)
10.1021/JA992393B
Designed signaling aptamers that transduce molecular recognition to changes in fluorescence intensity
S. Jhaveri (2000)
10.1021/AR00016A005
The RNA-folding problem
D. Draper (1992)
10.1038/344565A0
Mixed deoxyribo- and ribo-oligonucleotides with catalytic activity
Jean-Pierre Perreault (1990)
Quartet structures in telomeric DNA
J R Williamson (1994)
A Selective and sensitive fluoroionophore for HgII, AgI, and CuII with virtually decoupled fluorophore and receptor
K. Rurack (2000)
10.1101/087969589.37.113
4 Probing RNA Structure, Function, and History by Comparative Analysis
N. Pace (1993)
10.1038/86723
Immobilized RNA switches for the analysis of complex chemical and biological mixtures
Sukeerthi Seetharaman (2001)
10.1073/PNAS.95.11.6027
An amino acid as a cofactor for a catalytic polynucleotide.
A. Roth (1998)
10.1021/JA9538501
Design and Evaluation of a Peptidyl Fluorescent Chemosensor for Divalent Zinc
G. Walkup (1996)
10.1021/JA0021316
A highly sensitive and selective catalytic DNA biosensor for lead ions [9]
J. Li (2000)
10.1146/ANNUREV.BI.61.070192.004341
Zinc proteins: enzymes, storage proteins, transcription factors, and replication proteins.
J. Coleman (1992)
10.1002/ANIE.199628371
The Ca2+ Ion as a Cofactor for a Novel RNA-Cleaving Deoxyribozyme†
D. Faulhammer (1996)
10.1006/BBRC.2002.6581
Molecular aptamer beacons for real-time protein recognition.
J. Li (2002)
Probing RNA structure, function, and history by comparative analysis, in The RNA World
N. Pace (1999)
10.1021/ES040504N
Peer Reviewed: Recovering Sustainable Water from Wastewater
A. Levine (2004)
10.1016/S1074-5521(96)90170-2
In vitro selection of self-cleaving DNAs.
N. Carmi (1996)
10.1021/JA0281232
An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling.
Shirley H. J. Mei (2003)
A highly sensitive and selective catalytic DNA biosensor for lead ions
J. Li (2000)
Optical properties of Langmuir-Blodgett films
J. D. Swalen (1986)
10.1038/nsb0996-743
A catalytic DNA for porphyrin metallation
Y. Li (1996)
10.1021/BI00190A004
Tertiary structure motif of Oxytricha telomere DNA.
K. Wang (1994)
10.1021/AC981457I
Convergent, self-encoded bead sensor arrays in the design of an artificial nose.
T. Dickinson (1999)
10.1074/JBC.274.4.2255
Secondary Structure Mapping of an RNA Ligand That Has High Affinity for the MetJ Repressor Protein and Interference Modification Analysis of the Protein-RNA Complex*
A. McGregor (1999)
10.1093/clinchem/45.9.1628
Aptamers: an emerging class of molecules that rival antibodies in diagnostics.
S. Jayasena (1999)
Surface plasma oscillations and their applications, Phys
H. Raether (1977)
plications of combinatorial technologies to drug discovery
E. M. Gordon (1994)
Radioactive decay of non-radioactive surface plasmon excited by light, Z
E. Kretschmann (1968)
Combinatorial chemistry of nucleic acids
A. M. Kopylov (2000)
10.1038/82414
In vitro selection of signaling aptamers
S. Jhaveri (2000)
10.1021/CR960008K
In Vitro Selection of Catalytic Polynucleotides.
R. Breaker (1997)
10.1021/AC960270T
Interpretation of oligonucleotide mass spectra for determination of sequence using electrospray ionization and tandem mass spectrometry.
J. Ni (1996)
10.1002/ETC.5620220101
Analysis of arsenic bioavailability in contaminated soils.
R. Turpeinen (2003)
10.1021/JA016756V
Deoxyribozyme-based logic gates.
M. Stojanovic (2002)
10.1038/375611A0
A DNA metalloenzyme with DNA ligase activity
B. Cuenoud (1995)
10.1093/NAR/22.12.2183
Summary: the modified nucleosides of RNA.
P. Limbach (1994)
10.1006/ABIO.1999.4440
Application of high-density optical microwell arrays in a live-cell biosensing system.
L. A. Taylor (2000)
10.1039/B401794N
Advances in analytical technologies for environmental protection and public safety.
O. Sadik (2004)
10.1093/NAR/GNG130
Short bioactive Spiegelmers to migraine-associated calcitonin gene-related peptide rapidly identified by a novel approach: tailored-SELEX.
A. Vater (2003)
10.1007/BF01242319
Optical sensors for determination of heavy metal ions
I. Oehme (1997)
10.1002/ETC.5620201216
Characterization of dioxin-like activity of sediments from a Czech river basin.
K. Hilscherová (2001)
10.1021/JA0038171
Aptamer-based folding fluorescent sensor for cocaine.
M. Stojanovic (2001)
10.1021/AC9802325
Adapting selected nucleic acid ligands (aptamers) to biosensors.
R. Potyrailo (1998)
10.1038/42264
Fluorescent indicators for Ca2+based on green fluorescent proteins and calmodulin
A. Miyawaki (1997)
Surface plasma oscillations and their applications
H. Raether (1977)
10.1016/J.COPBIO.2005.10.006
Nucleic acid enzymes.
Roberto Fiammengo (2005)
10.1074/JBC.270.33.19370
Selection of a Suppressor Mutation That Restores Affinity of an Oligonucleotide Inhibitor for Thrombin Using in Vitro Genetics (*)
M. Tsiang (1995)
10.1038/NBT0896-1021
An enzyme-linked oligonucleotide assay
D. W. Drolet (1996)
10.1021/JM00035A001
Applications of combinatorial technologies to drug discovery. 1. Background and peptide combinatorial libraries.
M. Gallop (1994)
10.1103/PHYSREVB.10.1447
Electromagnetic fields in spatially dispersive media
G. Agarwal (1974)
10.1021/JA028962O
Structure-switching signaling aptamers.
Razvan Nutiu (2003)
10.1093/NAR/GKF522
Endogenous expression of a high-affinity pseudoknot RNA aptamer suppresses replication of HIV-1.
L. Chaloin (2002)
Application of high-density optical microwell arrays in a live-cell biosensing
L. C. Taylor (2000)
10.1039/B310154A
High affinity DNAzyme-based ligands for transition metal cations - a prototype sensor for Hg2+.
J. M. Thomas (2004)
10.1039/B411910J
Deoxyribozymes: DNA catalysts for bioorganic chemistry.
S. Silverman (2004)
Macromolecular therapeutics: emerging strategies for drug discovery in the postgenome era.
R. Juliano (2001)
Research paperA DNA enzyme with Mg2+-dependent RNA phosphoesterase activity
Ronald R. Breaker (1995)
10.1021/BI00339A012
Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA.
R. Brown (1985)
10.1021/AC00092A014
Surface-enhanced Raman gene probes.
T. Vo-Dinh (1994)
10.1146/ANNUREV.BB.23.060194.003415
G-quartet structures in telomeric DNA.
J. R. Williamson (1994)
10.1126/SCIENCE.287.5454.820
Adaptive recognition by nucleic acid aptamers.
T. Hermann (2000)
10.1093/NAR/28.8.1751
Design and optimization of effector-activated ribozyme ligases.
M. P. Robertson (2000)
10.1021/AC980864R
Determination of picomolar concentrations of metal ions using fluorescence anisotropy: biosensing with a "reagentless" enzyme transducer.
R. Thompson (1998)
10.1016/S0014-5793(02)03186-1
Biochemistry of arsenic detoxification
B. Rosen (2002)
DNAzyme-based catalytic system for quantification of mercury(II) and arsenic(V)
R. Vannela (2006)
Radioactive decay of non - radioactive surface plasmon excited by light
E. Kretschmann (1968)
10.1093/nar/gnf093
Tripartite molecular beacons.
Razvan Nutiu (2002)
10.1073/PNAS.90.8.3745
Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution.
R. Macaya (1993)
10.1002/BIES.950150503
RNA as a catalyst: Natural and designed ribozymes
U. von Ahsen (1993)
10.1016/S0968-0896(97)00044-8
Post-SELEX combinatorial optimization of aptamers.
B. Eaton (1997)



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