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Rhizobacterial Community Structure Differences Among Sorghum Cultivars In Different Growth Stages And Soils

Thiago R Schlemper, Marcio F A Leite, A. R. Lucheta, Mahdere Shimels, H. Bouwmeester, J. V. van Veen, E. Kuramae
Published 2017 · Medicine, Biology

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&NA; Plant genotype selects the rhizosphere microbiome. The success of plant‐microbe interactions is dependent on factors that directly or indirectly influence the plant rhizosphere microbial composition. We investigated the rhizosphere bacterial community composition of seven different sorghum cultivars in two different soil types (abandoned (CF) and agricultural (VD)). The rhizosphere bacterial community was evaluated at four different plant growth stages: emergence of the second (day 10) and third leaves (day 20), the transition between the vegetative and reproductive stages (day 35), and the emergence of the last visible leaf (day 50). At early stages (days 10 and 20), the sorghum rhizosphere bacterial community composition was mainly driven by soil type, whereas at late stages (days 35 and 50), the bacterial community composition was also affected by the sorghum genotype. Although this effect of sorghum genotype was small, different sorghum cultivars assembled significantly different bacterial community compositions. In CF soil, the striga‐resistant cultivar had significantly higher relative abundances of Acidobacteria GP1, Burkholderia, Cupriavidus (Burkholderiaceae), Acidovorax and Albidiferax (Comamonadaceae) than the other six cultivars. This study is the first to simultaneously investigate the contributions of plant genotype, plant growth stage and soil type in shaping sorghum rhizosphere bacterial community composition.
This paper references
Effects of plant
O 9859–78.Inceoglu (1904)
Über neuere Erfahrungen und Probleme auf dem Gebiet der Bodenbakteriologie und unter besonderer Berücksichtigung der Gründüngung und Brache
L Hiltner (1904)
Evaluation as a Field
C. Friedman (1997)
Influence of plant development, cultivar and soil type on microbial colonization of maize roots
L. Chiarini (1998)
Variation of Microbial Rhizosphere Communities in Response to Crop Species, Soil Origin, and Inoculation with Sinorhizobium meliloti L33
R. Miethling (2000)
A study on the responses of rhizosphere bacteria to sorgoleone and allelopathic root exudates
A Henry (2000)
Hiltner L
Google Scholar (2000)
PAST: paleontological statistics software package for education and data analysis version 2.09
O. Hammer-Muntz (2001)
Ø. Hammer (2001)
Soil and plant effects on microbial community structure.
J. Buyer (2002)
Wheat Cultivar-Specific Selection of 2,4-Diacetylphloroglucinol-Producing Fluorescent Pseudomonas Species from Resident Soil Populations
M. Mazzola (2003)
Evaluation of Root Exudates of Seven Sorghum Accessions
M. Czarnota (2004)
Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type
P. Marschner (2004)
Tables of composition and nutritional value of feed materials: pigs, poultry, cattle, sheep, goats, rabbits, horses and fish.
D. Sauvant (2004)
Tables of Composition and Nutritive value of FeedMaterials: Pigs, Poultry
D Sauvant (2004)
Bacterial Diversity in Rhizospheres of Nontransgenic and Transgenic Corn
M. Fang (2005)
Microb (2005)
Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure.
F. Rasche (2006)
The role of root exudates in rhizosphere interactions with plants and other organisms.
H. Bais (2006)
The ade4 Package: Implementing the Duality Diagram for Ecologists
S. Dray (2007)
Stability of organic carbon in deep soil layers controlled by fresh carbon supply
S. Fontaine (2007)
Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils
Brajesh K. Singh (2007)
Ethanol produc
ecologists. J Stat Softw (2007)
Sorghum. In: Kole C (ed.). Genome Mapping and Molecular Breeding in Plants volume
HP Singh (2007)
Effect of sorghum
DL 450277–80.Funnell-Harris (2007)
FactoMineR: An R Package for Multivariate Analysis
S. Lê (2008)
The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems.
M. V. D. van der Heijden (2008)
Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.)
L. Overbeek (2008)
Effect of sorghum seedlings, and previous crop, on soil fluorescent Pseudomonas spp.
D. Funnell-Harris (2008)
domonas spp. Plant Soil 2008;311:173–87
M Shimels (2008)
Phylogenetic diversity of Acidobacteria in a former agricultural soil
A. Kielak (2009)
Plant age and genotype impact the progression of bacterial community succession in the Arabidopsis rhizosphere.
S. Micallef (2009)
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere.
G. Berg (2009)
Bacterial communities in soybean rhizosphere in response to soil type, soybean genotype, and their growth stage
Xu Yanxia (2009)
The under-recognized
rhizosphere. FEMS Microbiol Ecol (2009)
Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities
Manuel Aira (2010)
Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated with Different Potato Cultivars in Two Fields
Özgül Inceoğlu (2010)
Microbial Community Composition as Affected by Dryland Cropping Systems and Tillage in a Semiarid Sandy Soil
V. Acosta‐Martínez (2010)
Divergent composition but similar function of soil food webs of individual plants: plant species and community effects.
T. M. Bezemer (2010)
Search and clustering orders of magnitude faster than BLAST
R. Edgar (2010)
Structural Requirements of Strigolactones for Hyphal Branching in AM Fungi
K. Akiyama (2010)
Strigolactones Are Transported through the Xylem and Play a Key Role in Shoot Architectural Response to Phosphate Deficiency in Nonarbuscular Mycorrhizal Host Arabidopsis1[C][W][OA]
W. Kohlen (2010)
Effect of phosphate
M 763675–84.Jamil (2010)
UCHIME improves sensitivity and speed of chimera detection
R. Edgar (2011)
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
R. Mendes (2011)
The under-recognized dominance of Verrucomicrobia in soil bacterial communities.
G. Bergmann (2011)
The underrecognized dominance of Verrucomicrobia in soil bacterial communities
GT Bergmann (2011)
Plant age and genotype
SA 3321097–100.Micallef (2011)
Ea-utils: Command-line Tools for Processing Biological Sequencing data
E. Aronesty (2011)
Bacterial diversity in rhizo
M 272194–200.Fang (2011)
Large and linked in scientific publishing
Laurie Goodman (2012)
FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms
Matthias Dodt (2012)
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
D. McDonald (2012)
Harnessing the rhizosphere microbiome through plant breeding and agricultural management
M. G. Bakker (2012)
Soil characteristics more strongly influence soil bacterial communities than land-use type.
E. Kuramae (2012)
Snakemake - a scalable bioinformatics workflow engine
J. Köster (2012)
Soil characteristics more
EE 282520–2.Kuramae (2012)
workflow engine
EE Kuramae (2012)
The Biological Ob - servationMatrix ( BIOM ) format or : how I learned to stopwor - rying and love the ome
D McDonald (2012)
FactoMineR: an R package formultivariate
type. FEMS Microbiol Ecol (2012)
rying and love the ome-ome. GigaScience
JM Marques (2012)
Pivoting the Plant Immune System from Dissection to Deployment
P. Jeschke (2013)
Assessment of genetic diversity in the sorghum reference set using EST-SSR markers
P. Ramu (2013)
Evidence of variability in the structure and recruitment of rhizospheric and endophytic bacterial communities associated with arable sweet sorghum (Sorghum bicolor (L) Moench)
J. Ramond (2013)
Ethanol Production from the Stem Juice of Different Sweet Sorghum Cultivars in the State of Pernambuco, Northeast of Brazil
E. Dutra (2013)
Going back to the roots: the microbial ecology of the rhizosphere
L. Philippot (2013)
The Diversity of Coolia spp. (Dinophyceae Ostreopsidaceae) in the Central Great Barrier Reef Region
P. Momigliano (2013)
Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions
J. M. Chaparro (2013)
Influence of plant
L 81–10.Chiarini (2013)
Long-term effects of eight soil health treatments to control plant-parasitic nematodes and Verticillium dahliae in agro-ecosystems
G. Korthals (2014)
Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance
D. Coleman-Derr (2014)
Effect of phosphate-based seed priming on strigolactone production and Striga hermonthica infection in cereals
M. Jamil (2014)
Taxonomical and functional microbial community selection in soybean rhizosphere
L. Mendes (2014)
Amazonian Dark Earth and Plant Species from the Amazon Region Contribute to Shape Rhizosphere Bacterial Communities
Amanda Barbosa Lima (2014)
Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar
Xiangzhen Li (2014)
Plant age and genotype affect the bacterial community composition in the tuber rhizosphere of field-grown sweet potato plants.
J. Marques (2014)
Oxygenic photosynthesis as a protection mechanism for cyanobacteria against iron-encrustation in environments with high Fe2+ concentrations
D. Ionescu (2014)
Ribosomal Database Project: data and tools for high throughput rRNA analysis
J. Cole (2014)
Rhizosphere microbiome assemblage is affected by plant development
J. M. Chaparro (2014)
Development of specific rhi
Ecol (2014)
Evaluation of root exu
MA Czarnota (2014)
Deciphering the rhizo
J sphere.ISME (2014)
Root exudation of phy
JM 8790–803.Chaparro (2014)
Building the crops of tomorrow
D 42D633–42.Coleman-Derr (2014)
Molecular characterization of a mutation affecting abscisic acid biosynthesis and consequently stomatal responses to humidity in an agriculturally important species
S. McAdam (2015)
Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China
Xiao-yang Gao (2015)
Impacts of bulk soil microbial community structure on rhizosphere microbiomes of Zea mays
M. G. Bakker (2015)
Association of Shifting Populations in the Root Zone Microbiome of Millet with Enhanced Crop Productivity in the Sahel Region (Africa)
S. J. Debenport (2015)
Metagenomic analysis of planktonic microbial consortia from a non-tidal urban-impacted segment of James River
B. Brown (2015)
Soil microbial community variation correlates most strongly with plant species identity, followed by soil chemistry, spatial location and plant genus
J. H. Burns (2015)
The plant microbiome at work.
K. Schlaeppi (2015)
Harnessing the rhizo
MG Bakker (2015)
Soil microbial community
JH 101.Burns (2015)
FLEXBAR—flexible barcode
Environ Microb (2015)
Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland
Noriko A. Cassman (2016)
Dry Season Constrains Bacterial Phylogenetic Diversity in a Semi-Arid Rhizosphere System
R. G. Taketani (2016)
Lettuce and rhizosphere microbiome responses to growth promoting Pseudomonas species under field conditions.
M. A. P. Cipriano (2016)
Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication.
N. V. van Dam (2016)
Evaluation of field resistance to Striga hermonthica (Del.) Benth. in Sorghum bicolor (L.) Moench. The relationship with strigolactones.
Nasreldin Mohemed (2016)
Ribosomal Database Project: data
92fiw197. Cole (2016)
Rhizosphere microbiome
grassland. Sci Reports (2016)
Vegan: Community Ecology Package
J Oksanen (2016)
Ecologically meaningful transformations for ordination of species data
P. Legendre (2017)
Mutation in sorghum LOW GERMINATION STIMULANT 1 alters strigolactones and causes Striga resistance
Daniel Gobena (2017)
Rhizosphere microbiomes of potato cultivated in the High Andes show stable and dynamic core microbiomes with different responses to plant development
S. Pfeiffer (2017)
Stability of organic carbon
S Fontaine (2017)
Impacts of bulk soil
MG Bakker (2017)
Snakemake — a scalable
J Köster
VSEARCH GitHub repository. Release 1.0. 16. Database: GitHub
T Flouri

This paper is referenced by
Wheat-root associated prokaryotic community: interplay between plant selection and location
Yuyin Zheng (2021)
Сравнительное исследование ризосферной микрофлоры культиваров подсолнечника – Helianthus annuus (Asteráceae, Magnoliópsida), выращенных на почвах с техногенными полиэлементными аномалиями
А. Ю. Муратова (2021)
Drought stress and plant ecotype drive microbiome recruitment in switchgrass.
Tie-Yuan Liu (2021)
Sweet Sorghum Genotypes Tolerant and Sensitive to Nitrogen Stress Select Distinct Root Endosphere and Rhizosphere Bacterial Communities
L. D. Lopes (2021)
Self-Crossing Leads to Weak Co-Variation of the Bacterial and Fungal Communities in the Rice Rhizosphere
Jing-jing Chang (2021)
Characterization of growth and development of sorghum genotypes with differential susceptibility to Striga hermonthica
D. Kawa (2021)
Pathogen infection influences a distinct microbial community composition in sorghum RILs
K. Masenya (2021)
The long-term colonization dynamics of endophytic bacteria in cucumber plants, and their effects on yield, fruit quality and Angular Leaf Spot Disease
A. Akköprü (2021)
Soil nutrient levels determine the variation of bacterial communities in the rhizosphere of rice under different conditions of climate and genotype
Yang Zhang (2021)
Crop type exerts greater influence upon rhizosphere phosphohydrolase gene abundance and phylogenetic diversity than phosphorus fertilization.
Andrew L. Neal (2021)
Microbiological Attributes and Performance of the Bacterial Community in Brazilian Cerrado Soil with Different Cover Crops
Sebastião Ferreira de Lima (2021)
Relationships between root morphology, root exudate compounds and rhizosphere microbial community in durum wheat
A. Iannucci (2021)
Methods to Identify Soil Microbial Bioindicators of Sustainable Management of Bioenergy Crops.
A. A. Navarrete (2021)
The Sorghum bicolor Root Exudate Sorgoleone Shapes Bacterial Communities and Delays Network Formation
Peng Wang (2021)
Successive plant growth amplifies genotype-specific assembly of the tomato rhizosphere microbiome.
Viviane Cordovez (2021)
Metabolic interactions in beneficial microbe recruitment by plants.
Davar Abedini (2021)
Crop development has more influence on shaping rhizobacteria of wheat than tillage practice and crop rotation pattern in an arid agroecosystem
Tong Li (2021)
Plant Microbiota Beyond Farming Practices: A Review
Mathieu Delitte (2021)
Microbial inoculation elicited changes in phyllosphere microbial communities and host immunity suppress Magnaporthe oryzae in a susceptible rice cultivar
Shobit Thapa (2021)
Dynamics of Bacterial Community Structure in the Rhizosphere and Root Nodule of Soybean: Impacts of Growth Stages and Varieties
S. Sohn (2021)
Characterization of growth and development of sorghum genotypes with differential susceptibility to Striga hermonthica.
D. Kawa (2021)
Metagenomic Insight into the Community Structure and Functional Genes in the Sunflower Rhizosphere Microbiome
T. T. Alawiye (2021)
Rhizosphere Biology: Interactions Between Microbes and Plants
A. Sharma (2021)
Perspectives for sustainable agriculture from the microbiome in plant rhizosphere
B. C. Nwachukwu (2021)
Analysis of rhizosphere bacterial diversity of Angelica dahurica var. formosana based on different experimental sites and varieties (strains)
Meiyan Jiang (2021)
Strigolactones, from Plants to Human Health: Achievements and Challenges
V. Dell’Oste (2021)
Inoculation with plant growth-promoting bacteria alters the rhizosphere functioning of tomato plants
M. Y. A. Zuluaga (2021)
How Sorghum Root Traits can Contribute to Cereal Yield Increase
T. Wojciechowski (2021)
Adaptation of the parasitic plant lifecycle: Germination is controlled by essential host signaling molecules.
H. Bouwmeester (2020)
Rhizosphere microbiome assemble and its impact on plant growth.
Qian Qu (2020)
Temporal and Cultivar-Specific Effects on Potato Root- and Rhizosphere Fungal Diversity
K. Loit (2020)
Host-specificity of Mycobiota in the Rhizosphere of Plants
S. Katoch (2020)
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