Online citations, reference lists, and bibliographies.
← Back to Search

Sequence Analysis Of A 282-Kilobase Region Surrounding The Citrus Tristeza Virus Resistance Gene (Ctv) Locus InPoncirus Trifoliata L. Raf.1

Zhongnan Yang, X. Ye, J. Molina, M. Roose, T. Mirkov
Published 2003 · Biology, Medicine

Save to my Library
Download PDF
Analyze on Scholarcy Visualize in Litmaps
Share
Reduce the time it takes to create your bibliography by a factor of 10 by using the world’s favourite reference manager
Time to take this seriously.
Get Citationsy
Citrus tristeza virus (CTV) is the major virus pathogen causing significant economic damage to citrus worldwide, and a single dominant gene, Ctv, provides broad spectrum resistance to CTV inPoncirus trifoliata L. Raf. Ctv was physically mapped to a 282-kb region using a P. trifoliata bacterial artificial chromosome library. This region was completely sequenced to about 8× coverage using a shotgun sequencing strategy and primer walking for gap closure. Sequence analysis predicts 22 putative genes, two mutator-like transposons and eight retrotransposons. This sequence analysis also revealed some interesting features of this region of the P. trifoliata genome: a disease resistance gene cluster with seven members and eight retrotransposons clustered in a 125-kb gene-poor region. Comparative sequence analysis suggests that six genes in theCtv region have significant sequence similarity with their orthologs in bacterial artificial chromosome clones F7H2 and F21T11 from Arabidopsis chromosome I. However, the analysis of gene colinearity between P. trifoliata and Arabidopsis indicates that Arabidopsis genome sequence information may be of limited use for positional gene cloning in P. trifoliataand citrus. Analysis of candidate genes for Ctv is also discussed.
This paper references
Molecular Cloning: A Laboratory Manual
J. Sambrook (1983)
10.1093/nar/12.1Part1.387
A comprehensive set of sequence analysis programs for the VAX
J. Devereux (1984)
10.1002/j.1460-2075.1985.tb03949.x
High level expression of introduced chimaeric genes in regenerated transformed plants
J. D. Jones (1985)
10.2307/2399846
Phylogenetics of seed plants : An analysis of nucleotide sequences from the plastid gene rbcL
J. F. Smith (1993)
10.1016/0092-8674(94)90282-8
The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats
M. Mindrinos (1994)
10.1016/B978-0-08-092639-1.50010-1
CHAPTER SIX – Shotgun Cloning as the Strategy of Choice to Generate Templates for High-throughput Dideoxynucleotide Sequencing
A. Bodenteich (1994)
10.1016/0092-8674(94)90283-6
The product of the tobacco mosaic virus resistance gene N: Similarity to toll and the interleukin-1 receptor
S. Whitham (1994)
10.1016/0378-1119(95)00714-8
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.
E. L. Sonnhammer (1995)
10.1126/science.274.5288.765
Nested Retrotransposons in the Intergenic Regions of the Maize Genome
P. SanMiguel (1996)
10.1093/NAR/25.17.3389
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
S. Altschul (1997)
10.1016/S0092-8674(00)80470-5
Novel Disease Resistance Specificities Result from Sequence Exchange between Tandemly Repeated Genes at the Cf-4/9 Locus of Tomato
M. Parniske (1997)
10.1006/JMBI.1997.0951
Prediction of complete gene structures in human genomic DNA.
C. Burge (1997)
10.1139/G97-792
Development and characterization of SCAR markers linked to the citrus tristeza virus resistance gene from Poncirus trifoliata.
Z. Deng (1997)
10.1146/annurev.arplant.48.1.575
PLANT DISEASE RESISTANCE GENES.
K. Hammond-Kosack (1997)
10.1093/NAR/25.24.4876
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
J. Thompson (1997)
10.1146/ANNUREV.PHYTO.35.1.293
Structure and evolution of the rp1 complex conferring rust resistance in maize.
S. Hulbert (1997)
10.1146/ANNUREV.PHYTO.35.1.271
Advances in the molecular genetic analysis of the flax-flax rust interaction.
J. Ellis (1997)
10.1073/PNAS.95.5.1971
Comparative genetics in the grasses.
K. Devos (1997)
A high-resolution linkage map of the citrus tristeza virus resistance gene region in Poncirus trifoliata (L.) Raf.
D. Fang (1998)
10.1101/GR.8.11.1113
Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process.
R. Michelmore (1998)
10.1093/NAR/26.4.1107
GeneMark.hmm: new solutions for gene finding.
A. Lukashin (1998)
10.1105/tpc.11.5.781
The Rx Gene from Potato Controls Separate Virus Resistance and Cell Death Responses
A. Bendahmane (1999)
10.1105/tpc.12.5.677
Resistance to Turnip Crinkle Virus in Arabidopsis Is Regulated by Two Host Genes and Is Salicylic Acid Dependent but NPR1, Ethylene, and Jasmonate Independent
P. Kachroo (2000)
10.1038/35048692
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
The Arabidopsis Genome Initiative (2000)
10.1046/J.1365-313X.2000.00781.X
Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana.
C. O’Neill (2000)
10.1007/s001220051548
Cloning and characterization of NBS-LRR class resistance-gene candidate sequences in citrus
Z. Deng (2000)
10.1073/PNAS.97.1.489
Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement of tobacco etch virus.
S. Chisholm (2000)
10.1094/MPMI.2000.13.10.1130
The broad-spectrum tospovirus resistance gene Sw-5 of tomato is a homolog of the root-knot nematode resistance gene Mi.
S. Brommonschenkel (2000)
10.1105/tpc.12.3.381
The Complete Sequence of 340 kb of DNA around the Rice Adh1–Adh2 Region Reveals Interrupted Colinearity with Maize Chromosome 4
R. Tarchini (2000)
10.1046/J.1365-313X.2000.00790.X
Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella.
A. Acarkan (2000)
10.1105/tpc.12.4.569
Arabidopsis RTM2 Gene Is Necessary for Specific Restriction of Tobacco Etch Virus and Encodes an Unusual Small Heat Shock–like Protein
S. Whitham (2000)
10.1073/PNAS.160271297
Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny.
H. M. Ku (2000)
10.1007/s004380100471
Fine genetic mapping and BAC contig development for the citrus tristeza virus resistance gene locus in Poncirus trifoliata (Raf.)
Z. Deng (2001)
10.1007/s001220000527
Construction of a bacterial artificial chromosome (BAC) library for citrus and identification of BAC contigs containing resistance gene candidates
Z. Deng (2001)
Recombination and spontaneous mutation at the major cluster of resistance genes in lettuce (Lactuca sativa).
D. B. Chin (2001)
10.2307/3871354
Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes.
M. Rossberg (2001)
10.1073/PNAS.98.4.1699
Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae.
Z. Tu (2001)
10.1104/PP.126.3.1331
Sequence and analysis of the tomato JOINTLESS locus.
L. Mao (2001)
10.1139/GEN-44-3-382
Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf.
Z. Yang (2001)
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).
S. Goff (2002)
10.1126/SCIENCE.1068037
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)
J. Yu (2002)
10.1007/BF00226090
A localized linkage map of the citrus tristeza virus resistance gene region
F. Gmitter (2004)



This paper is referenced by
10.1007/978-3-030-15308-3_7
Markers, Maps, and Marker-Assisted Selection
Tokurou Shimizu (2020)
10.1111/tpj.14993
A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
Z. Peng (2020)
10.1186/s12870-020-02399-z
Fast-track breeding system to introduce CTV resistance of trifoliate orange into citrus germplasm, by integrating early flowering transgenic plants with marker-assisted selection
T. Endo (2020)
10.1038/s41598-019-56987-7
Identification of quantitative trait loci (QTL) controlling resistance to pea weevil (Bruchus pisorum) in a high-density integrated DArTseq SNP-based genetic map of pea
T. Aznar-Fernández (2020)
10.1002/ps.5696
Identification of potential candidate genes controlling pea aphid tolerance in a Pisum fulvum high-density integrated DArTseq SNP-based genetic map.
E. Barilli (2019)
10.1186/s12864-019-6339-0
Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight
S. Fu (2019)
10.1111/nph.15482
The p33 protein of Citrus tristeza virus affects viral pathogenicity by modulating a host immune response.
Yong-Duo Sun (2019)
10.1007/978-1-4939-9558-5_14
Citrus tristeza virus: Host RNA Silencing and Virus Counteraction.
S. Ruiz-Ruiz (2019)
10.1016/j.virusres.2018.05.018
Endogenous pararetrovirus sequences are widely present in Citrinae genomes.
Huiwen Yu (2019)
10.1007/978-1-4939-9558-5
Citrus Tristeza Virus
A. Catara (2019)
10.11648/J.AJAF.20180602.11
Functional Characterization of a WD-Repeat Protein Gene ( OsWD1 ) in Rice
Siou-Luan He (2018)
10.1007/978-3-319-91944-7_11
Citrus Genetics and Breeding
J. Cuenca (2018)
The Evolution of Endogenous Pararetrovirus Sequences in the Genomes of Rice and Other Grass Species ( イネ及びイネ科植物種のゲノムに内在する パラレトロウイルス配列の進化 )
Zhonggai Chen (2018)
Characterization of transcriptionally active atwwp1 nuclear bodies that confer partial immunity against begomoviruses
I. P. Calil (2017)
10.3389/fmicb.2016.02139
Immune Receptors and Co-receptors in Antiviral Innate Immunity in Plants
Bianca C. Gouveia (2017)
10.1007/s10658-017-1293-7
A possible role of CTV.20 gene methylation in response to Citrus tristeza virus infection
V. Fanelli (2017)
10.1016/B978-0-444-63661-4.00004-9
Engineering Resistance to Plant Viruses: Present Status and Future Prospects
J. Kumar (2017)
Analysis of Petunia vein clearing virus (PVCV) sequences, retroelements and tandem repeats in Petunia axillaris N and P. inflata S6
T. Schwarzacher (2016)
10.5010/JPB.2016.43.3.261
Current status and prospects of molecular marker development for systematic breeding program in citrus
H. Kim (2016)
10.1111/ppl.12395
Rootstock-scion interaction affecting citrus response to CTV infection: a proteomic view.
P. Laino (2016)
10.1016/J.SCIENTA.2015.10.038
Screening of ‘King’ mandarin (Citrus nobilis Lour) × Poncirus trifoliata ((L.) Raf.) hybrids as citrus rootstocks tolerants to iron chlorosis
Mary-Rus Martínez-Cuenca (2016)
10.1016/j.coviro.2015.12.001
The battle for survival between viruses and their host plants.
A. Boualem (2016)
10.1371/journal.pone.0138786
Genome-Wide Characterization and Expression Analysis of Major Intrinsic Proteins during Abiotic and Biotic Stresses in Sweet Orange (Citrus sinensis L. Osb.)
Cristina de Paula Santos Martins (2015)
10.4238/2015.November.30.16
Molecular cloning and expression analysis of jasmonic acid dependent but salicylic acid independent LeWRKY1.
M. Lu (2015)
ARTIFICIAL ANALYSIS OF MOLECULAR MARKER LOCI LINKED TO TREE RESISTANCE RESPONSE BY AN ARTIFICIAL NEURAL NETWORK
J. Fernández (2015)
Molecular cloning and expression analysis of jasmonic acid dependent but salicylic acid independent LeWRKY 1
M. Lu (2015)
10.3389/fpls.2014.00307
Dominant resistance against plant viruses
D. de Ronde (2014)
10.1128/genomeA.01063-13
Population of Endogenous Pararetrovirus Genomes in Carrizo Citrange
A. Roy (2014)
10.1016/j.virol.2014.04.035
Differential tropism in roots and shoots infected by Citrus tristeza virus.
S. Harper (2014)
10.1007/s11295-014-0797-y
Construction of genetic linkage map and graphical genotyping of pseudo-backcrossed F2 (BC’2) progeny to introduce a CTV resistance from Poncirus trifoliata (L.) Raf. into Citrus by introgression breeding
S. Ohta (2014)
10.1016/B978-0-12-411584-2.00012-3
Establishment of endogenous pararetroviruses in the rice genome
R. Liu (2014)
10.1016/j.coviro.2013.08.012
Endogenous pararetroviruses--a reservoir of virus infection in plants.
M. Chabannes (2013)
See more
Semantic Scholar Logo Some data provided by SemanticScholar