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AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity Of Wood Formation In Populus Tremula[OPEN]

David Sundell, N. Street, M. Kumar, E. Mellerowicz, M. Kucukoglu, C. Johnsson, V. Kumar, C. Mannapperuma, N. Delhomme, O. Nilsson, H. Tuominen, Edouard Pesquet, U. Fischer, Totte Niittylä, B. Sundberg, T. R. Hvidsten
Published 2017 · Medicine, Biology

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The AspWood large-scale data set comprises high-spatial-resolution RNA-seq transcriptome profiles collected across the phloem-cambium-xylem developmental zone of aspen trees. Trees represent the largest terrestrial carbon sink and a renewable source of ligno-cellulose. There is significant scope for yield and quality improvement in these largely undomesticated species, and efforts to engineer elite varieties will benefit from improved understanding of the transcriptional network underlying cambial growth and wood formation. We generated high-spatial-resolution RNA sequencing data spanning the secondary phloem, vascular cambium, and wood-forming tissues of Populus tremula. The transcriptome comprised 28,294 expressed, annotated genes, 78 novel protein-coding genes, and 567 putative long intergenic noncoding RNAs. Most paralogs originating from the Salicaceae whole-genome duplication had diverged expression, with the exception of those highly expressed during secondary cell wall deposition. Coexpression network analyses revealed that regulation of the transcriptome underlying cambial growth and wood formation comprises numerous modules forming a continuum of active processes across the tissues. A comparative analysis revealed that a majority of these modules are conserved in Picea abies. The high spatial resolution of our data enabled identification of novel roles for characterized genes involved in xylan and cellulose biosynthesis, regulators of xylem vessel and fiber differentiation and lignification. An associated web resource (AspWood, http://aspwood.popgenie.org) provides interactive tools for exploring the expression profiles and coexpression network.
This paper references
10.1111/tpj.12641
Arabidopsis thaliana IRX10 and two related proteins from psyllium and Physcomitrella patens are xylan xylosyltransferases.
J. Jensen (2014)
10.1101/GR.1224503
OrthoMCL: identification of ortholog groups for eukaryotic genomes.
L. Li (2003)
10.1111/nph.13383
Xylem development - from the cradle to the grave.
Kamil Růžička (2015)
10.1093/treephys/tps081
Revisiting the sequencing of the first tree genome: Populus trichocarpa.
S. Wullschleger (2013)
10.1111/j.1365-313X.2008.03777.x
A unique program for cell death in xylem fibers of Populus stem.
C. Courtois-Moreau (2009)
10.1016/j.cub.2016.05.053
Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity
J. Immanen (2016)
10.1111/j.1365-313X.2008.03533.x
Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots.
M. Yamaguchi (2008)
10.1093/molbev/msw054
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
S. Kumar (2016)
10.1093/jxb/err438
Xylem cell death: emerging understanding of regulation and function.
Benjamin Bollhöner (2012)
10.1016/j.ydbio.2009.05.542
Old dogs, new tricks: regulatory evolution in conserved genetic modules leads to novel morphologies in plants.
Faye M. Rosin (2009)
10.1186/1471-2164-14-885
Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica
J. Immanen (2013)
Pectin biosynthesis: GALS1 in Arabidopsis thaliana is a b-1,4-galactan b-1,4-galactosyltransferase
A. J. Liwanag (2012)
10.2183/pjab.92.98
Signaling, transcriptional regulation, and asynchronous pattern formation governing plant xylem development
H. Fukuda (2016)
10.1093/NAR/GKG770
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.
B. Haas (2003)
10.1007/s00425-013-1865-5
Bioinformatic and functional characterization of the basic peroxidase 72 from Arabidopsis thaliana involved in lignin biosynthesis
J. Herrero (2013)
Differences in the timing of cell death, differentiation and function among three different types of ray parenchyma cells in the hardwood Populus sieboldii 3 P
S. Nakaba (2012)
10.1111/jipb.12334
Simultaneously disrupting AtPrx2, AtPrx25 and AtPrx71 alters lignin content and structure in Arabidopsis stem.
Jun Shigeto (2015)
Ultrastructure of ‘amorphous layer’ in xylem parenchyma cell wall of angiosperm species
T. Fujii (1981)
10.1201/9780203166444.ch13
Sampling of cambial region tissues for high resolution analysis.
C. Uggla (2002)
10.1186/s13059-015-0772-4
New genes drive the evolution of gene interaction networks in the human and mouse genomes
W. Zhang (2015)
10.1038/nbt.1883
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
M. Grabherr (2011)
10.1111/tpj.12898
An unusual xylan in Arabidopsis primary cell walls is synthesised by GUX3, IRX9L, IRX10L and IRX14
Jenny C. Mortimer (2015)
Arabidopsis thaliana RGXT1 and RGXT2 encode Golgilocalized (1,3)-alpha-D-xylosyltransferases involved in the synthesis of pectic rhamnogalacturonan-II
J. Egelund (2006)
10.1101/gr.125146.111
Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus.
Eli Rodgers-Melnick (2012)
10.1104/pp.105.072744
ARABINAN DEFICIENT 1 Is a Putative Arabinosyltransferase Involved in Biosynthesis of Pectic Arabinan in Arabidopsis1[W]
Jesper Harholt (2005)
Asparagus IRX 9 , IRX 10 , and IRX 14 A Are Components of an Active Xylan Backbone Synthase Complex that Forms in the Golgi Apparatus 1 [ OPEN ]
W. Zeng (2016)
R: A language and environment for statistical computing.
R. Team (2014)
10.1105/tpc.15.00314
Proteomic Analysis of Microtubule Interacting Proteins over the Course of Xylem Tracheary Element Formation in Arabidopsis[OPEN]
P. Derbyshire (2015)
10.1038/msb.2011.75
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
F. Sievers (2011)
10.1242/dev.072629
OCTOPUS, a polarly localised membrane-associated protein, regulates phloem differentiation entry in Arabidopsis thaliana
Elisabeth Truernit (2012)
10.1073/pnas.1222314110
Suppression of Arabidopsis protophloem differentiation and root meristem growth by CLE45 requires the receptor-like kinase BAM3
S. Depuydt (2013)
10.1105/tpc.113.117770
LACCASE Is Necessary and Nonredundant with PEROXIDASE for Lignin Polymerization during Vascular Development in Arabidopsis[C][W]
Q. Zhao (2013)
10.1105/tpc.106.047399
SND1, a NAC Domain Transcription Factor, Is a Key Regulator of Secondary Wall Synthesis in Fibers of Arabidopsis[W]
R. Zhong (2006)
10.1111/nph.12387
Post mortem function of AtMC9 in xylem vessel elements.
Benjamin Bollhöner (2013)
10.1111/j.1365-313X.2008.03580.x
Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is involved in xyloglucan biosynthesis.
O. Zabotina (2008)
Lignin biosynthesis.
W. Boerjan (2003)
10.1023/A:1010699919325
Unravelling cell wall formation in the woody dicot stem
E. Mellerowicz (2004)
10.1126/science.1253736
Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation
K. Furuta (2014)
10.1016/J.PHYTOCHEM.2007.08.020
Role of Tyr residues on the protein surface of cationic cell-wall-peroxidase (CWPO-C) from poplar: potential oxidation sites for oxidative polymerization of lignin.
S. Sasaki (2008)
10.1101/GAD.1331305
Transcription switches for protoxylem and metaxylem vessel formation.
Minoru Kubo (2005)
10.1016/j.cub.2014.07.050
A bHLH Complex Activates Vascular Cell Division via Cytokinin Action in Root Apical Meristem
Kyoko Ohashi-Ito (2014)
10.1074/jbc.M606379200
Two Xyloglucan Xylosyltransferases Catalyze the Addition of Multiple Xylosyl Residues to Cellohexaose*
David M Cavalier (2006)
10.1093/bioinformatics/btq033
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan (2010)
10.1038/nrg.2016.85
Evolution to the rescue: using comparative genomics to understand long non-coding RNAs
Igor Ulitsky (2016)
10.1093/bioinformatics/btu170
Trimmomatic: a flexible trimmer for Illumina sequence data
A. Bolger (2014)
10.1073/pnas.1407337111
Molecular genetic framework for protophloem formation
Antia Rodriguez-Villalon (2014)
Expansins abundant in secondary xylem belong to subgroup A of the alpha-expansin gene family.
M. Gray-Mitsumune (2004)
10.1073/pnas.1308936110
Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa
S. Lu (2013)
10.1111/nph.14458
NorWood: a gene expression resource for evo‐devo studies of conifer wood development
Soile Jokipii-Lukkari (2017)
Esau's Plant anatomy
R. Evert (2016)
10.1093/molbev/msw051
Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens
J. Wang (2016)
10.1104/pp.112.199356
Xyloglucan Xylosyltransferases XXT1, XXT2, and XXT5 and the Glucan Synthase CSLC4 Form Golgi-Localized Multiprotein Complexes1[W][OA]
Yi-Hsiang Chou (2012)
10.1186/gb-2005-6-4-r34
A genomic approach to investigate developmental cell death in woody tissues of Populus trees
Charleen Moreau (2004)
10.1105/tpc.114.131193
The Arabidopsis Cellulose Synthase Complex: A Proposed Hexamer of CESA Trimers in an Equimolar Stoichiometry[W]
Joseph L. Hill (2014)
10.1186/s13059-014-0550-8
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
M. Love (2014)
10.1038/nature02100
APL regulates vascular tissue identity in Arabidopsis
M. Bonke (2003)
10.1105/tpc.007773
Xyloglucan Endotransglycosylases Have a Function during the Formation of Secondary Cell Walls of Vascular Tissues Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.007773.
V. Bourquin (2002)
10.1105/tpc.108.059154
Identifying New Components Participating in the Secondary Cell Wall Formation of Vessel Elements in Zinnia and Arabidopsis[W]
S. Endo (2009)
10.1111/J.1469-8137.2005.01378.X
EST data suggest that poplar is an ancient polyploid.
L. Sterck (2005)
10.1126/science.1128691
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
G. Tuskan (2006)
10.1006/ANBO.1999.0931
The Differentiation of Contact Cells and Isolation Cells in the Xylem Ray Parenchyma of Populus maximowiczii
Y. Murakami (1999)
10.1104/PP.118.1.125
Purification and characterization of peroxidases correlated with lignification in poplar xylem.
J. H. Christensen (1998)
10.1111/J.1467-7652.2007.00295.X
Ectopic expression of a wood-abundant expansin PttEXPA1 promotes cell expansion in primary and secondary tissues in aspen.
M. Gray-Mitsumune (2008)
10.1093/mp/ssr035
Molecular dissection of xylan biosynthesis during wood formation in poplar.
C. Lee (2011)
10.1016/j.devcel.2012.12.013
A bHLH complex controls embryonic vascular tissue establishment and indeterminate growth in Arabidopsis.
Bert De Rybel (2013)
10.1093/jxb/err339
Tensional stress generation in gelatinous fibres: a review and possible mechanism based on cell-wall structure and composition.
E. Mellerowicz (2012)
10.1242/dev.044941
The PXY-CLE41 receptor ligand pair defines a multifunctional pathway that controls the rate and orientation of vascular cell division
J. Etchells (2010)
10.1073/PNAS.93.17.9282
Auxin as a positional signal in pattern formation in plants.
C. Uggla (1996)
10.1126/SCIENCE.286.5439.509
Emergence of scaling in random networks
Barabási (1999)
10.1073/pnas.0900689106
Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase
D. H. Barratt (2009)
10.1105/tpc.111.083667
PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species[W][OA]
M. Mutwil (2011)
10.1186/s12575-016-0041-2
Extracting functional trends from whole genome duplication events using comparative genomics
Russell A. Hermansen (2016)
The Vascular Cambium: Development and Structure
P. Larson (1994)
10.1016/j.tplants.2009.02.004
An update on the nomenclature for the cellulose synthase genes in Populus.
M. Kumar (2009)
10.1093/nar/gkr955
i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
Sebastian Proost (2012)
10.1038/nrg.2016.49
Coming of age: ten years of next-generation sequencing technologies
S. Goodwin (2016)
10.1093/nar/gkr944
Phytozome: a comparative platform for green plant genomics
D. Goodstein (2012)
10.1093/bioinformatics/bts611
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
E. Kopylova (2012)
10.1242/dev.047662
Interplay of auxin, KANADI and Class III HD-ZIP transcription factors in vascular tissue formation
Michael Ilegems (2010)
Guidelines for RNA-Seq data analysis
N. Delhomme (2014)
10.1104/pp.15.01919
Asparagus IRX9, IRX10, and IRX14A Are Components of an Active Xylan Backbone Synthase Complex that Forms in the Golgi Apparatus1[OPEN]
W. Zeng (2016)
10.1371/journal.pone.0069219
The Poplar MYB Master Switches Bind to the SMRE Site and Activate the Secondary Wall Biosynthetic Program during Wood Formation
R. Zhong (2013)
10.1038/nature12211
The Norway spruce genome sequence and conifer genome evolution
B. Nystedt (2013)
10.1093/aob/mcv046
The cell biology of lignification in higher plants.
Jaime Barros (2015)
10.1111/j.1469-8137.2010.03315.x
Characterization of cellulose synthase complexes in Populus xylem differentiation.
Dongliang Song (2010)
10.1186/1471-2164-15-106
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
Sergiu Netotea (2013)
10.1104/pp.104.055087
Carbohydrate-Active Enzymes Involved in the Secondary Cell Wall Biogenesis in Hybrid Aspen1
H. Aspeborg (2005)
10.1093/bioinformatics/btu638
HTSeq—a Python framework to work with high-throughput sequencing data
S. Anders (2015)
10.1007/s10265-003-0087-5
Down-regulation of an anionic peroxidase in transgenic aspen and its effect on lignin characteristics
Y. Li (2003)
10.1371/JOURNAL.PBIO.0050008
Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
J. Faith (2007)
10.1105/tpc.107.055137
The AGL62 MADS Domain Protein Regulates Cellularization during Endosperm Development in Arabidopsis[W]
Il-Ho Kang (2008)
10.1093/bioinformatics/btp024
FrameDP: sensitive peptide detection on noisy matured sequences
J. Gouzy (2009)
10.1111/J.1365-313X.2004.02070.X
Differential stage-specific regulation of cyclin-dependent kinases during cambial dormancy in hybrid aspen.
A. Espinosa-Ruiz (2004)
10.1016/j.cub.2003.09.035
Radial Patterning of Arabidopsis Shoots by Class III HD-ZIP and KANADI Genes
J. F. Emery (2003)
10.1105/tpc.104.024190
A High-Resolution Transcript Profile across the Wood-Forming Meristem of Poplar Identifies Potential Regulators of Cambial Stem Cell Identityw⃞
J. Schrader (2004)
10.1073/pnas.1014716108
Spatio-temporal sequence of cross-regulatory events in root meristem growth
Emanuele Scacchi (2010)
10.1073/pnas.0808444105
Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system
Yuki Hirakawa (2008)
10.1007/s00425-014-2217-9
Expression divergence of cellulose synthase (CesA) genes after a recent whole genome duplication event in Populus
Naoki Takata (2014)
10.1105/tpc.113.117697
SND1 Transcription Factor–Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa[C][W]
Y. Lin (2013)
10.1093/bioinformatics/bts606
A high-performance computing toolset for relatedness and principal component analysis of SNP data
Xiuwen Zheng (2012)
10.1105/tpc.112.106625
Pectin Biosynthesis: GALS1 in Arabidopsis thaliana Is a β-1,4-Galactan β-1,4-Galactosyltransferase[C][W][OA]
A. J. M. Liwanag (2012)
10.1093/bioinformatics/bts635
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin (2013)
10.1016/j.tplants.2012.07.002
Golgi-localized enzyme complexes for plant cell wall biosynthesis.
Ai Oikawa (2013)
10.1111/tpj.12643
Two Arabidopsis proteins synthesize acetylated xylan in vitro.
Breeanna R. Urbanowicz (2014)
Secondary xylem cell development
J. R. Barnett (1981)
10.1046/J.1432-1327.1999.00061.X
Biochemical characterization, molecular cloning and expression of laccases - a divergent gene family - in poplar.
P. Ranocha (1999)
10.1111/pbi.12232
Populus GT43 family members group into distinct sets required for primary and secondary wall xylan biosynthesis and include useful promoters for wood modification.
Christine Ratke (2015)
10.1007/s00468-011-0640-0
Differences in the timing of cell death, differentiation and function among three different types of ray parenchyma cells in the hardwood Populus sieboldii × P. grandidentata
Satoshi Nakaba (2011)
10.1073/pnas.1112816108
Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan:galacturonosyltransferase complex
M. A. Atmodjo (2011)
10.1093/pcp/pcq064
The poplar MYB transcription factors, PtrMYB3 and PtrMYB20, are involved in the regulation of secondary wall biosynthesis.
Ryan L. McCarthy (2010)
10.1146/annurev-genet-120213-092159
Nonadditive gene expression in polyploids.
M. Yoo (2014)
Populus GT 43 family members group into distinct sets required for primary and secondary wall xylan biosynthesis and include useful promoters for wood modi fi cation
E. Rodgers-Melnick (2015)
ZEN1 Is a Key Enzyme in the Degradation of Nuclear DNA during Programmed Cell Death of Tracheary Elements
Hiroo Fukudaab (2002)
10.1093/treephys/tpt058
Chimeric repressor of PtSND2 severely affects wood formation in transgenic Populus.
H. Wang (2013)
10.1105/tpc.105.036566
Arabidopsis thaliana RGXT1 and RGXT2 Encode Golgi-Localized (1,3)-α-d-Xylosyltransferases Involved in the Synthesis of Pectic Rhamnogalacturonan-II[W][OA]
Jack Egelund (2006)
10.1371/journal.pone.0105726
Arabidopsis NAC Domain Proteins, VND1 to VND5, Are Transcriptional Regulators of Secondary Wall Biosynthesis in Vessels
J. Zhou (2014)
10.1104/pp.112.199208
Complexes with Mixed Primary and Secondary Cellulose Synthases Are Functional in Arabidopsis Plants1[C][W]
A. Carroll (2012)
10.1093/jxb/erv081
Molecular control of wood formation in trees.
Zheng-Hua Ye (2015)
10.1038/cr.2014.83
The willow genome and divergent evolution from poplar after the common genome duplication
Xiaogang Dai (2014)
10.1016/S0014-5793(04)00224-8
Lignin dehydrogenative polymerization mechanism: a poplar cell wall peroxidase directly oxidizes polymer lignin and produces in vitro dehydrogenative polymer rich in β‐O‐4 linkage
S. Sasaki (2004)
Suppression of Arabidopsis
S. Depuydt (2013)
10.1186/s13068-016-0603-1
Biomass traits and candidate genes for bioenergy revealed through association genetics in coppiced European Populus nigra (L.)
M. Allwright (2016)
10.1038/nbt.1621
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
C. Trapnell (2010)
10.1007/s00425-016-2640-1
Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa
Rui Shi (2016)
10.1038/nature08836
MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor
A. Schlereth (2010)
10.1104/pp.104.039321
Expansins Abundant in Secondary Xylem Belong to Subgroup A of the α-Expansin Gene Family1[w]
M. Gray-Mitsumune (2004)
10.1111/nph.13557
The Plant Genome Integrative Explorer Resource: PlantGenIE.org.
David Sundell (2015)
10.1073/pnas.261293398
A transcriptional roadmap to wood formation
M. Hertzberg (2001)
10.1016/j.plantsci.2016.08.002
Cambial stem cells and their niche.
C. Johnsson (2016)
10.1126/science.1255215
Integration of growth and patterning during vascular tissue formation in Arabidopsis
Bert De Rybel (2014)
10.1093/bioinformatics/btr673
M3: an improved SNP calling algorithm for Illumina BeadArray data
Gengxin Li (2012)
10.1186/1754-6834-7-11
Aspen pectate lyase PtxtPL1-27 mobilizes matrix polysaccharides from woody tissues and improves saccharification yield
A. Biswal (2014)
10.1093/pcp/pcp175
Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes.
Rui Shi (2010)



This paper is referenced by
10.3389/fpls.2019.00176
Xylan in the Middle: Understanding Xylan Biosynthesis and Its Metabolic Dependencies Toward Improving Wood Fiber for Industrial Processing
Martin P. Wierzbicki (2019)
10.1111/nph.16782
MiR319a-Targeted PtoTCP20 Regulates Secondary Growth via interactions with PtoWOX4 and PtoWND6 in Populus tomentosa.
J. Hou (2020)
10.1111/pbi.13309
Overexpression of a developing xylem cDNA library in transgenic poplar generates high mutation rate specific to wood formation
James Rauschendorfer (2019)
For Peer Review 1 The title : The function of two type II metacaspases in woody tissues of Populus trees 1 2
Soile Jokipii-Lukkari (2018)
10.1111/nph.15658
Auxin-mediated Aux/IAA-ARF-HB signaling cascade regulates secondary xylem development in Populus.
C. Xu (2019)
10.1016/j.jtbi.2018.11.005
The regulatory role of shikimate in plant phenylalanine metabolism.
Zeno Adams (2019)
10.3389/fpls.2018.00272
Ethylene-Related Gene Expression Networks in Wood Formation
Carolin Seyfferth (2018)
10.14288/1.0377726
Examining the roles of sucrose synthase isoforms in Arabidopsis growth and development
Danyu Yao (2019)
10.1016/j.ijbiomac.2020.06.235
Integrative analysis of the RNA interference toolbox in two Salicaceae willow species, and their roles in stress response in poplar (Populus trichocarpa Torr. & Gray).
Yunpeng Cao (2020)
10.1093/treephys/tpy027
Molecular cloning and characterization of a brassinosteriod biosynthesis-related gene PtoDWF4 from Populus tomentosa
Y. Shen (2018)
10.1101/805614
An Improved Genome Assembly of the European Aspen Populus tremula
Bastian Schiffthaler (2019)
10.1111/pbi.12958
The developmental dynamics of the Populus stem transcriptome
Q. Chao (2019)
10.3390/genes10090690
Wood Transcriptome Profiling Identifies Critical Pathway Genes of Secondary Wall Biosynthesis and Novel Regulators for Vascular Cambium Development in Populus
Min-ha Kim (2019)
10.1111/nph.16411
Fibre‐specific regulation of lignin biosynthesis improves biomass quality in Populus
Jinshan Gui (2020)
10.1007/s00709-019-01416-9
Structural features in tension wood and distribution of wall polymers in the G-layer of in vitro grown poplars
Raphaël Decou (2019)
10.1002/9781119312994.APR0688
High Spatial Resolution Profiling in Tree Species
Stefania Giacomello (2019)
Cytokinin signaling in hybrid aspen cambial development and growth
J. Immanen (2018)
10.1111/tpj.14465
A solid update on wood-forming enzymes.
Lyza G. Maron (2019)
10.3390/plants8010020
Lateral Transport of Organic and Inorganic Solutes
Emilie Aubry (2019)
10.1038/s41598-018-32869-2
Transcriptome Analysis of Intrusively Growing Flax Fibers Isolated by Laser Microdissection
T. Gorshkova (2018)
10.3390/ijms20184623
Analysis of Orthologous SECONDARY WALL-ASSOCIATED NAC DOMAIN1 (SND1) Promotor Activity in Herbaceous and Woody Angiosperms
Libert B Tonfack (2019)
10.1111/nph.16244
Dual regulation of xylem formation by an auxin-mediated PaC3H17-PaMYB199 module in Populus.
Xianfeng Tang (2019)
10.1007/978-3-030-35772-6_8
microRNA-Mediated Regulation of Plant Vascular Development and Secondary Growth
Ana Milhinhos (2020)
10.1111/nph.15739
Organellar carbon metabolism is coordinated with distinct developmental phases of secondary xylem.
Desré Pinard (2019)
10.1111/ppl.12766
The plant hormone auxin directs timing of xylem development by inhibition of secondary cell wall deposition through repression of secondary wall NAC‐domain transcription factors
C. Johnsson (2019)
10.1093/pcp/pcz146
Competing Endogenous RNA Networks Underlying Anatomical and Physiological Characteristics of Poplar Wood in Acclimation to Low Nitrogen Availability.
Yan Lu (2019)
10.1111/ppl.12729
Sucrose transport and carbon fluxes during wood formation.
Amir Mahboubi (2018)
10.1039/C8SE00471D
Overexpression of a serine hydroxymethyltransferase increases biomass production and reduces recalcitrance in the bioenergy crop Populus
J. Zhang (2019)
10.1111/pbi.13187
A xylem‐produced peptide PtrCLE20 inhibits vascular cambium activity in Populus
Yingying Zhu (2019)
10.1111/nph.14631
WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
M. Kucukoglu (2017)
10.3389/fpls.2020.00652
Transcriptional and Post-transcriptional Regulation of Lignin Biosynthesis Pathway Genes in Populus
Jingdong Zhang (2020)
10.1101/720904
Genetic control of tracheid properties in Norway spruce wood
J. Baison (2019)
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