Online citations, reference lists, and bibliographies.
Referencing for people who value simplicity, privacy, and speed.
Get Citationsy
← Back to Search

The CBio Cancer Genomics Portal: An Open Platform For Exploring Multidimensional Cancer Genomics Data.

E. Cerami, J. Gao, U. Dogrusoz, Benjamin E. Gross, S. O. Sumer, B. A. Aksoy, A. Jacobsen, Caitlin J Byrne, M. Heuer, E. Larsson, Yevgeniy Antipin, B. Reva, A. Goldberg, C. Sander, N. Schultz
Published 2012 · Biology, Medicine

Save to my Library
Download PDF
Analyze on Scholarcy Visualize in Litmaps
Share
Reduce the time it takes to create your bibliography by a factor of 10 by using the world’s favourite reference manager
Time to take this seriously.
Get Citationsy
The cBio Cancer Genomics Portal (http://cbioportal.org) is an open-access resource for interactive exploration of multidimensional cancer genomics data sets, currently providing access to data from more than 5,000 tumor samples from 20 cancer studies. The cBio Cancer Genomics Portal significantly lowers the barriers between complex genomic data and cancer researchers who want rapid, intuitive, and high-quality access to molecular profiles and clinical attributes from large-scale cancer genomics projects and empowers researchers to translate these rich data sets into biologic insights and clinical applications.
This paper references
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data
E Cerami (2012)
10.1038/nmeth0210-92
IntOGen: integration and data mining of multidimensional oncogenomic data
G. Gundem (2010)
10.1038/nature08987
International network of cancer genome projects
T. Hudson (2010)
Correction : The cBio Cancer Genomics Portal : An Open Platform for Exploring Multidimensional Cancer Genomics Data
E Cerami
10.1074/mcp.T500003-MCP200
Use of Reverse Phase Protein Microarrays and Reference Standard Development for Molecular Network Analysis of Metastatic Ovarian Carcinoma*
K. Sheehan (2005)
10.1038/ng.619
Subtype-specific genomic alterations define new targets for soft tissue sarcoma therapy
J. Barretina (2010)
10.1093/ANNONC/MDM234
Founder mutations in BRCA1 and BRCA2 genes.
R. Ferla (2007)
10.1093/nar/gkq1039
Pathway Commons, a web resource for biological pathway data
Ethan G. Cerami (2011)
10.1093/nar/gkt1223
Pfam: the protein families database
R. Finn (2014)
10.1038/nbt.1754
Integrative Genomics Viewer
J. Robinson (2011)
10.1038/nature10166
Integrated Genomic Analyses of Ovarian Carcinoma
D. Bell (2011)
10.1038/nrc1457
Hallmarks of 'BRCAness' in sporadic cancers
Nicholas L. Turner (2004)
10.1038/nature07385
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
R. McLendon (2008)
International Network of Cancer Genome Projects
klaguia (2010)
10.1093/nar/gkq1113
The UCSC cancer genomics browser: update 2011
J. Sanborn (2011)
10.1016/j.ccr.2010.05.026
Integrative genomic profiling of human prostate cancer.
B. Taylor (2010)
10.1093/nar/gkr407
Predicting the functional impact of protein mutations: application to cancer genomics
B. Reva (2011)
10.1093/database/bar026
International Cancer Genome Consortium Data Portal—a one-stop shop for cancer genomics data
Junjun Zhang (2011)



This paper is referenced by
Phylogenetic Indian Buffet Process: Theory and Applications in Integrative Analysis of Cancer Genomics
Mengjie Chen (2013)
The DNA 2 nuclease / helicase is an estrogen-dependent gene mutated in breast and ovarian cancers
Carmit Strauss (2014)
10.5075/epfl-thesis-8307
Privacy-Enhancing Technologies for Medical and Genomic Data: From Theory to Practice
J. L. Raisaro (2018)
10.1186/s40425-019-0584-2
Tumor genomic alterations in severe-combined immunodeficiency bare-lymphocyte syndrome genes are associated with high mutational burden and disproportional neo-antigen rates
Y. Wang (2019)
10.31768/2312-8852.2015.37(2):105-110
Aberrant expression of selenium-containing glutathione peroxidases in clear cell renal cell carcinomas.
E. Rudenko (2015)
Preeclampsia and Placenta Protein 13 : Are they Exclusive ?
Abdelrahman Yousif (2019)
10.1016/j.ccr.2014.05.015
Ubiquitylation of autophagy receptor Optineurin by HACE1 activates selective autophagy for tumor suppression.
Zhengzhao Liu (2014)
10.1007/s10549-019-05370-1
Transforming growth factor beta receptor II (TGFBR2) promoter region polymorphism in Brazilian breast cancer patients: association with susceptibility, clinicopathological features, and interaction with TGFB1 haplotypes
Glauco Akelinghton Freire Vitiello (2019)
10.18632/oncotarget.6856
GPR171 expression enhances proliferation and metastasis of lung cancer cells
S. H. Dho (2016)
Role Of Thromboxane Receptor-Alpha In Prostate Cancer Progression
Prasanna Ekambaram (2012)
Actionable Therapeutic Targets Breast Cancers after Neoadjuvant Chemotherapy Identifies Molecular Profiling of the Residual Disease of Triple-Negative
J. Balko (2014)
10.1172/jci.insight.89473
Real-time genomic profiling of histiocytoses identifies early-kinase domain BRAF alterations while improving treatment outcomes.
Lynn H Lee (2017)
10.18632/oncotarget.15306
PLCB4 copy gain and PLCß4 overexpression in primary gastrointestinal stromal tumors: Integrative characterization of a lipid-catabolizing enzyme associated with worse disease-free survival
C. Li (2017)
10.1002/cam4.1293
AKT3 drives adenoid cystic carcinoma development in salivary glands
Katalin Zboray (2018)
A novel brain tumour model in zebrafish reveals 1 the role of YAP activation in 2 MAPK / PI 3 K induced malignant growth
Marie Mayrhofer (2016)
10.1007/978-1-4939-9207-2_13
A Roadmap for the Computational Prediction and Experimental Validation of Competitive Endogenous RNAs.
Florian A. Karreth (2019)
10.3390/jcm7120501
Distinctive Expression and Amplification of Genes at 11q13 in Relation to HPV Status with Impact on Survival in Head and Neck Cancer Patients
F. Hermida-Prado (2018)
10.14288/1.0073661
Defects in messenger RNA processing and biogenesis of RNA polymerases contribute to eukaryotic genome instability
Sean W. Minaker (2013)
Assessment of HER2 status in invasive breast cancer with increased centromere 17 copy number by fluorescence in situ hybridization
장민혜 (2015)
Abstract. One of the main causes of cancer incidence and mortality worldwide is lung cancer. This study focused on the function of basic leucine zipper ATF-like transcription factor (BATF) in non-small cell lung cancer (NSCLC). Using NSCLC
Yu Feng (2019)
10.2147/OTT.S185662
The role of IRAK1 in breast cancer patients treated with neoadjuvant chemotherapy
Muwen Yang (2019)
Biomedical Knowledge Production in the Age of Big Data
S. Leonelli (2017)
Estudio personalizado de datos omicos en paragangliomas y feocromocitomas
Vázquez Cuesta (2019)
Full coding sequence mutation screening of KRAS gene in gastric cancer
P. Queirós (2015)
Lawrence Berkeley National Laboratory Recent Work Title FAM 83 family oncogenes are broadly involved in human cancers : an integrative multi-omics approach
A. Snijders (2017)
10.18632/oncotarget.25243
Targeting invadopodia-mediated breast cancer metastasis by using ABL kinase inhibitors
Tomer Meirson (2018)
INVESTIGATION OF THE ROLE OF CUZD1-STAT5 SIGNALING IN MAMMARY GLAND DEVELOPMENT AND BREAST CANCER BY JANELLE MAPES DISSERTATION Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Molecular and Integrative Physiology
I. Bagchi (2017)
10.15252/msb.20188557
De novo gene signature identification from single‐cell RNA‐seq with hierarchical Poisson factorization
H. M. Levitin (2019)
10.1038/s41379-020-00699-1
Recurrent urothelial carcinoma-like FGFR3 genomic alterations in malignant Brenner tumors of the ovary
D. Lin (2020)
10.1139/bcb-2017-0020
A systematic understanding of signaling by ErbB2 in cancer using phosphoproteomics.
C. Sidhanth (2018)
10.7150/jca.28127
High Expression Levels of AGGF1 and MFAP4 Predict Primary Platinum-Based Chemoresistance and are Associated with Adverse Prognosis in Patients with Serous Ovarian Cancer
H. Zhao (2019)
10.1172/JCI73940
The functional and pathologic relevance of autophagy proteases.
A. Fernández (2015)
See more
Semantic Scholar Logo Some data provided by SemanticScholar