Online citations, reference lists, and bibliographies.
Please confirm you are human
(Sign Up for free to never see this)
← Back to Search

The Real Cost Of Sequencing: Scaling Computation To Keep Pace With Data Generation

P. Muir, Shantao Li, Shaoke Lou, Daifeng Wang, Daniel J Spakowicz, Leonidas Salichos, J. Zhang, G. Weinstock, Farren J. Isaacs, J. Rozowsky, M. Gerstein
Published 2016 · Medicine

Save to my Library
Download PDF
Analyze on Scholarcy
Share
As the cost of sequencing continues to decrease and the amount of sequence data generated grows, new paradigms for data storage and analysis are increasingly important. The relative scaling behavior of these evolving technologies will impact genomics research moving forward.



This paper is referenced by
10.1109/DSN.2017.53
Secure Tera-scale Data Crunching with a Small TCB
Bruno Vavala (2017)
10.1177/1177932218821373
Tackling the Challenges of FASTQ Referential Compression
A. Guerra (2019)
10.7717/peerj.8592
fRNAkenseq: a fully powered-by-CyVerse cloud integrated RNA-sequencing analysis tool
Allen H. Hubbard (2020)
10.1371/journal.pgen.1006685
Whole-genome analysis of papillary kidney cancer finds significant noncoding alterations
Shantao Li (2017)
10.20944/PREPRINTS201908.0120.V1
QTLs identified for Biofortification Traits in Wheat: A Review
P. Devi (2019)
10.2139/ssrn.3345110
An improved lightweight privacy preserving authentication scheme for SIP-based-VOIP using smart card 1
Saeed Ullah Jan (2017)
10.1101/076968
PEMapper / PECaller: A simplified approach to whole-genome sequencing
H. Johnston (2016)
10.1101/366740
SigLASSO: a LASSO approach jointly optimizing sampling likelihood and cancer mutation signatures
Shantao Li (2018)
10.1186/s13007-016-0128-4
A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly
M. Góralski (2016)
10.3389/fimmu.2018.00118
Next-Generation Sequencing of Antibody Display Repertoires
R. Rouet (2018)
10.1109/BIBM.2017.8217695
Distributed gene clinical decision support system based on cloud computing
Bo Xu (2017)
10.15252/embj.201797945
Don't go in circles: confounding factors in gene expression profiling
John Toubia (2018)
10.1093/nar/gkw927
Localized structural frustration for evaluating the impact of sequence variants
Sushant Kumar (2016)
The Ocean Genome: Conservation and the Fair, Equitable and Sustainable Use of Marine Genetic Resources.
Robert Blasiak (2020)
10.1017/S0031182019000726
Parasitological research in the molecular age.
C. Selbach (2019)
10.3389/fpls.2017.01317
Toward Genomics-Based Breeding in C3 Cool-Season Perennial Grasses
S. K. Talukder (2017)
10.1016/j.toxcx.2019.100011
Development of a TaqMan qPCR assay for detection of Alexandrium spp and application to harmful algal bloom monitoring
R. Hatfield (2019)
10.1093/gigascience/gix100
Parallel sequencing lives, or what makes large sequencing projects successful
Javier Quilez (2017)
10.1038/s41467-020-17388-x
Using sigLASSO to optimize cancer mutation signatures jointly with sampling likelihood
Shantao Li (2020)
10.1101/2020.03.22.20041145
Global transmission network of SARS-CoV-2: from outbreak to pandemic
P. Skums (2020)
10.1038/s41598-018-29381-y
Massively parallel sequencing of cell-free DNA in plasma for detecting gynaecological tumour-associated copy number alteration
M. Nakabayashi (2018)
10.1007/s00122-018-3056-z
Efficient genome-wide genotyping strategies and data integration in crop plants
D. Torkamaneh (2018)
10.12688/f1000research.16083.1
seqCAT: a Bioconductor R-package for variant analysis of high
Erik Fasterius (2018)
10.1186/s40538-017-0095-7
MALDI-TOF mass spectroscopy of yeasts and filamentous fungi for research and diagnostics in the agricultural value chain
D. Drissner (2017)
10.1093/bioinformatics/btz272
Evolution of biosequence search algorithms: a brief survey
G. Kucherov (2019)
10.1145/3332186.3333156
CHURP: A Lightweight CLI Framework to Enable Novice Users to Analyze Sequencing Datasets in Parallel
Joshua Baller (2019)
10.1145/3360551
Seq: a high-performance language for bioinformatics
Ariya Shajii (2019)
10.3389/fpubh.2019.00041
Healthcare System Priorities for Successful Integration of Genomics: An Australian Focus
Belinda L. Burns (2019)
Automated Text Mining and Ranked List Algorithms for Drug Discovery in Acute Myeloid Leukemia
Damian Tran (2019)
Novel computational techniques for mapping and classifying Next-Generation Sequencing data. (Nouvelles techniques informatiques pour la localisation et la classification de données de séquençage haut débit)
K. Brinda (2016)
10.1142/9789811232701_0001
Achieving Trustworthy Biomedical Data Solutions
P. Washington (2020)
Algorithms for biosequence search: past, present and future
G. Kucherov (2018)
See more
Semantic Scholar Logo Some data provided by SemanticScholar