Epigenetic Regulation Of Abiotic Stress Responses In Plants
V. Chinnusamy, M. Dalal, J. Zhu
Published 2014 · Biology
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Regulation of transposable elements in maize.
D. Lisch (2012)
Gene regulation during cold stress acclimation in plants.
V. Chinnusamy (2010)
Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis.
C. S. Kwon (2009)
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.
A. T. Wierzbicki (2012)
Transgenerational Stress Memory Is Not a General Response in Arabidopsis
A. Pecinka (2009)
Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants.
V. Chinnusamy (2004)
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Shawn Cokus (2008)
ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis
Xianwu Zheng (2008)
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice
M. Kapoor (2008)
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
Zhihuan Gao (2010)
The role of chromatin-remodeling factor PKL in balancing osmotic stress responses during Arabidopsis seed germination.
Elian Perruc (2007)
SUMO association with repressor complexes, emerging routes for transcriptional control.
M. García-Domínguez (2009)
Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins
A. Boyko (2010)
Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)
Wensheng Wang (2011)
FVE, an Arabidopsis homologue of the retinoblastoma-associated protein that regulates flowering time and cold response, binds to chromatin as a large multiprotein complex
Jin Jeon (2011)
Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response
Li-ting Chen (2010)
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.
Xin-jian He (2009)
Effects of abiotic stress on plants: a systems biology perspective
G. Cramer (2011)
Up-regulation of stress-inducible genes in tobacco and Arabidopsis cells in response to abiotic stresses and ABA treatment correlates with dynamic changes in histone H3 and H4 modifications
Agnieszka Sokół (2007)
Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks
A. P. Ortega-Galisteo (2008)
RNA silencing in plants
D. Baulcombe (2004)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law (2010)
Atypical epigenetic mark in an atypical location: cytosine methylation at asymmetric (CNN) sites within the body of a non-repetitive tomato gene
R. González (2011)
Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation.
K. Earley (2010)
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
R. Lister (2008)
The role of MET1 in RNA-directed de novoand maintenance methylation of CG dinucleotides
W. Aufsatz (2004)
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
J. P. Jackson (2002)
The effects of heat induction and the siRNA biogenesis pathway on the transgenerational transposition of ONSEN, a copia-like retrotransposon in Arabidopsis thaliana.
Wataru Matsunaga (2012)
Transcriptional Control of Gene Expression by MicroRNAs
Basel Khraiwesh (2010)
Resetting of FLOWERING LOCUS C expression after epigenetic repression by vernalization
C. Sheldon (2008)
RNA Polymerase IV Functions in Paramutation in Zea mays
Karl F. Erhard (2009)
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3
A. Lindroth (2004)
Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes
R. Karan (2012)
A genetic link between cold responses and flowering time through FVE in Arabidopsis thaliana
Hyoun-Joung Kim (2004)
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
D. Zilberman (2007)
Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis.
B. Zheng (2009)
A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development.
Xin-jian He (2009)
Understanding and Improving Salt Tolerance in Plants
V. Chinnusamy (2005)
SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV
Julie A. Law (2011)
RNA-directed DNA methylation and demethylation in plants
V. Chinnusamy (2009)
Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression
Y. Sakuma (2006)
JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis.
I. R. Searle (2010)
ARGONAUTE4 Control of Locus-Specific siRNA Accumulation and DNA and Histone Methylation
D. Zilberman (2003)
Histone ADP-ribosylation in DNA repair, replication and transcription.
S. Messner (2011)
siRNAs from miRNA sites mediate DNA methylation of target genes
P. Chellappan (2010)
Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana.
Jong-Myong Kim (2012)
DNA methylation mediated by a microRNA pathway.
Liang Wu (2010)
Chromatin modifications and remodeling in plant abiotic stress responses.
M. Luo (2012)
Achievements and challenges in understanding plant abiotic stress responses and tolerance.
F. Qin (2011)
An RNA-dependent RNA polymerase is required for paramutation in maize
M. Alleman (2006)
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene.
L. Bartee (2001)
RNA‐directed DNA methylation and plant development require an IWR1‐type transcription factor
T. Kanno (2010)
Epigenome Sequencing Comes of Age
J. Zhu (2008)
Histone Acetylation and Chromatin Remodeling Are Required for UV-B–Dependent Transcriptional Activation of Regulated Genes in Maize[W]
P. Casati (2008)
Perceptions of epigenetics
A. Bird (2007)
The SWI/SNF chromatin-remodeling gene AtCHR12 mediates temporary growth arrest in Arabidopsis thaliana upon perceiving environmental stress.
L. Mlynárová (2007)
In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing.
J. Haag (2012)
Repression of Flowering in Arabidopsis Requires Activation of FLOWERING LOCUS C Expression by the Histone Variant H2A.Z[W][OA]
R. Deal (2007)
ROS1, a Repressor of Transcriptional Gene Silencing in Arabidopsis, Encodes a DNA Glycosylase/Lyase
Z. Gong (2002)
A Histone Acetyltransferase Regulates Active DNA Demethylation in Arabidopsis
W. Qian (2012)
HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis.
K. Wu (2008)
Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis
X. Li (2012)
DEMETER, a DNA Glycosylase Domain Protein, Is Required for Endosperm Gene Imprinting and Seed Viability in Arabidopsis
Y. Choi (2002)
Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana
K. van Dijk (2010)
Transgenerational Inheritance and Resetting of Stress-Induced Loss of Epigenetic Gene Silencing in Arabidopsis
Christina Lang-Mladek (2010)
Silencing: new faces of Morpheus’ molecule
A. T. Wierzbicki (2010)
A DNA 3' phosphatase functions in active DNA demethylation in Arabidopsis.
Maria Isabel Martinez-Macias (2012)
Arabidopsis HDA6 Regulates Locus-Directed Heterochromatin Silencing in Cooperation with MET1
Taiko Kim To (2011)
Epigenetic control of transposon transcription and mobility in Arabidopsis.
Etienne Bucher (2012)
The ZmASR1 Protein Influences Branched-Chain Amino Acid Biosynthesis and Maintains Kernel Yield in Maize under Water-Limited Conditions1[W][OA]
Laetitia Virlouvet (2011)
HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis
M. Luo (2012)
Active DNA demethylation mediated by DNA glycosylases.
J. Zhu (2009)
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.
D. Pontier (2005)
Plant Nuclear RNA Polymerase IV Mediates siRNA and DNA Methylation-Dependent Heterochromatin Formation
Y. Onodera (2005)
Arabidopsis Floral Initiator SKB1 Confers High Salt Tolerance by Regulating Transcription and Pre-mRNA Splicing through Altering Histone H4R3 and Small Nuclear Ribonucleoprotein LSM4 Methylation[C][W]
Zhaoliang Zhang (2011)
The Arabidopsis Cold-Responsive Transcriptome and Its Regulation by ICE1w⃞
B. Lee (2005)
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress
H. Ito (2011)
Histone-modifying enzymes: encrypting an enigmatic epigenetic code.
Jean-François Couture (2006)
RNA Polymerase IV Directs Silencing of Endogenous DNA
A. Herr (2005)
A Lily ASR Protein Involves Abscisic Acid Signaling and Confers Drought and Salt Resistance in Arabidopsis1[w]
C. Yang (2005)
Epigenetic responses to stress: triple defense?
Ruben Gutzat (2012)
Regulated AtHKT1 gene expression by a distal enhancer element and DNA methylation in the promoter plays an important role in salt tolerance.
D. Baek (2011)
HAB1–SWI3B Interaction Reveals a Link between Abscisic Acid Signaling and Putative SWI/SNF Chromatin-Remodeling Complexes in Arabidopsis[C][W]
Á. Sáez (2008)
The role of epigenetic processes in controlling flowering time in plants exposed to stress.
M. W. Yaish (2011)
Salt and drought stress signal transduction in plants.
J. Zhu (2002)
DNA methylation systems and targets in plants
P. Meyer (2011)
Involvement of Ethylene in Stress-Induced Expression of the TLC1.1 Retrotransposon from Lycopersicon chilense Dun.1[w]
G. Tapia (2005)
Stress-induced DNA methylation changes and their heritability in asexual dandelions.
Koen J. F. Verhoeven (2010)
RNA-directed DNA methylation.
H. Zhang (2011)
Transduction of RNA‐directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana
H. Numa (2010)
Rice cytosine DNA methyltransferases – gene expression profiling during reproductive development and abiotic stress
R. Sharma (2009)
Arabidopsis MSI1 is required for negative regulation of the response to drought stress.
Cristina M Alexandre (2009)
Constitutive expression of the cold-regulated Arabidopsis thaliana COR15a gene affects both chloroplast and protoplast freezing tolerance.
N. Artus (1996)
Co-expression of soybean Dicer-like genes in response to stress and development
Shaun J Curtin (2012)
Chlorine ions but not sodium ions alter genome stability of Arabidopsis thaliana.
A. Boyko (2010)
Paramutation: a trans-homolog interaction affecting heritable gene regulation.
J. B. Hollick (2012)
Disruption Mutations of ADA2b and GCN5 Transcriptional Adaptor Genes Dramatically Affect Arabidopsis Growth, Development, and Gene Expression Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.007922.
K. Vlachonasios (2003)
Involvement of KDM1C histone demethylase–OTLD1 otubain-like histone deubiquitinase complexes in plant gene repression
A. Krichevsky (2011)
Triple Loss of Function of Protein Phosphatases Type 2C Leads to Partial Constitutive Response to Endogenous Abscisic Acid1[C][W][OA]
S. Rubio (2009)
Role of histone deacetylases HDA6 and HDA19 in ABA and abiotic stress response
Li-ting Chen (2010)
Arabidopsis Cor15am Is a Chloroplast Stromal Protein That Has Cryoprotective Activity and Forms Oligomers1[W][OA]
Katsuhiro Nakayama (2007)
Atypical RNA polymerase subunits required for RNA-directed DNA methylation
T. Kanno (2005)
Epigenetic regulation of stress responses in plants.
V. Chinnusamy (2009)
ddm1 plants are sensitive to methyl methane sulfonate and NaCl stresses and are deficient in DNA repair
Youli Yao (2012)
IDN1 and IDN2: two proteins required for de novo DNA methylation in Arabidopsis thaliana
Israel Ausín (2009)
Genes, genetics, and epigenetics: a correspondence.
Wu Ct (2001)
AtCopeg1, the unique gene originated from AtCopia95 retrotransposon family, is sensitive to external hormones and abiotic stresses
Ke Duan (2008)
The Temperature-Dependent Change in Methylation of the Antirrhinum Transposon Tam3 Is Controlled by the Activity of Its Transposase[W]
Shin-nosuke Hashida (2005)
Role of an Arabidopsis AP2/EREBP-Type Transcriptional Repressor in Abscisic Acid and Drought Stress Responses
C. Song (2005)
Chromatin regulation functions in plant abiotic stress responses.
Jong-Myong Kim (2010)
Epigenetic inheritance in plants
I. Henderson (2007)
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
Xianwu Zheng (2007)
Transcriptional silencing and promoter methylation triggered by double‐stranded RNA
M. Mette (2000)
AtHKT1 is a salt tolerance determinant that controls Na+ entry into plant roots
A. Rus (2001)
Phosphorylation of histone H3 in plants--a dynamic affair.
A. Houben (2007)
Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility.
D. W. Ng (2012)
RNA-directed de novo methylation of genomic sequences in plants
M. Wassenegger (1994)
Epigenetic regulation of flowering.
E. Dennis (2007)
Tomato (Lycopersicon esculentum) Transcript Induced by Water Deficit and Ripening
N. Iusem (1993)
Low relative humidity triggers RNA-directed de novo DNA methylation and suppression of genes controlling stomatal development
P. Tricker (2012)
Stress-Induced Chromatin Changes: A Critical View on Their Heritability
A. Pecinka (2012)
Expression of ZmMET1, a gene encoding a DNA methyltransferase from maize, is associated not only with DNA replication in actively proliferating cells, but also with altered DNA methylation status in cold-stressed quiescent cells.
N. Steward (2000)
Arabidopsis HDA6 is required for freezing tolerance.
T. To (2011)
Transgenerational Inheritance of Modified DNA Methylation Patterns and Enhanced Tolerance Induced by Heavy Metal Stress in Rice (Oryza sativa L.)
Xiufang Ou (2012)
Functions of microRNAs in plant stress responses.
R. Sunkar (2012)
Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
Ken Naito (2009)
Genetic and Functional Diversification of Small RNA Pathways in Plants
Zhixin Xie (2004)
Histones and histone modifications
C. Peterson (2004)
Role of the Arabidopsis DRM Methyltransferases in De Novo DNA Methylation and Gene Silencing
X. Cao (2002)
Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana.
T. Taji (2002)
Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes
A. T. Wierzbicki (2008)
Arabidopsis Histone Methyltransferase SET DOMAIN GROUP8 Mediates Induction of the Jasmonate/Ethylene Pathway Genes in Plant Defense Response to Necrotrophic Fungi1[W][OA]
A. Berr (2010)
Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.).
H. Kou (2011)
A Grape ASR Protein Involved in Sugar and Abscisic Acid Signaling Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.013854.
B. Çakır (2003)
春化による後成的抑制後のFLOWERING LOCUS C発現のリセット
C. Candice (2008)
Role of the DRM and CMT3 Methyltransferases in RNA-Directed DNA Methylation
X. Cao (2003)
RNA Silencing Genes Control de Novo DNA Methylation
S. Chan (2004)
Over‐expression of the water and salt stress‐regulated Asr1 gene confers an increased salt tolerance
Y. Kalifa (2004)
An Effector of RNA-Directed DNA Methylation in Arabidopsis Is an ARGONAUTE 4- and RNA-Binding Protein
Xin-jian He (2009)
Seeing the forest for the trees: a wide perspective on RNA-directed DNA methylation.
Huiming Zhang (2012)
Epigenetic regulation of flowering time in polyploids.
Dustin R. Mayfield (2011)
Gene silencing mediated by promoter homology occurs at the level of transcription and results in meiotically heritable alterations in methylation and gene activity.
Y. D. Park (1996)
H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis
S. V. Kumar (2010)
Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes
Christian Ibarra (2012)
Nucleolar dominance and ribosomal RNA gene silencing.
S. Tucker (2010)
Abscisic acid-mediated epigenetic processes in plant development and stress responses.
V. Chinnusamy (2008)
ABA receptors: the START of a new paradigm in phytohormone signalling.
J. Klingler (2010)
Methylation and demethylation of the Arabidopsis genome.
I. Furner (2011)
Epigenetic Reprogramming in Plant and Animal Development
S. Feng (2010)
The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression
A. Bilichak (2012)
Histone variants and modifications in plant gene regulation.
R. Deal (2011)
Transgeneration memory of stress in plants
J. Molinier (2006)
Transcriptional regulation by histone ubiquitination and deubiquitination.
Y. Zhang (2003)
Genome demethylation and imprinting in the endosperm.
Matthew J. Bauer (2011)
Germline reprogramming of heterochromatin in plants.
K. Creasey (2010)
An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation
F. Malagnac (2002)
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
X. Cao (2002)
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