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Genes Conserved For Arbuscular Mycorrhizal Symbiosis Identified Through Phylogenomics
A. Bravo, T. York, N. Pumplin, L. Mueller, M. J. Harrison
Published 2016 · Biology, Medicine
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Arbuscular mycorrhizal symbiosis (AMS), a widespread mutualistic association of land plants and fungi1, is predicted to have arisen once, early in the evolution of land plants2–4. Consistent with this notion, several genes required for AMS have been conserved throughout evolution5 and their symbiotic functions preserved, at least between monocot and dicot plants6,7. Despite its significance, knowledge of the plants' genetic programme for AMS is limited. To date, most genes required for AMS have been found through commonalities with the evolutionarily younger nitrogen-fixing Rhizobium legume symbiosis (RLS)8 or by reverse genetic analyses of differentially expressed candidate genes9. Large sequence-indexed insertion mutant collections and recent genome editing technologies have vastly increased the power of reverse genetics but selection of candidate genes, from the thousands of genes that change expression during AMS, remains an arbitrary process. Here, we describe a phylogenomics approach to identify genes whose evolutionary history predicts conservation for AMS and we demonstrate the accuracy of the predictions through reverse genetics analysis. Phylogenomics analysis of 50 plant genomes resulted in 138 genes from Medicago truncatula predicted to function in AMS. This includes 15 genes with known roles in AMS. Additionally, we demonstrate that mutants in six previously uncharacterized AMS-conserved genes are all impaired in AMS. Our results demonstrate that phylogenomics is an effective strategy to identify a set of evolutionarily conserved genes required for AMS.
This paper references
Basic local alignment search tool.
S. Altschul (1990)
Palmitoyl-acyl carrier protein (ACP) thioesterase and the evolutionary origin of plant acyl-ACP thioesterases.
A. Jones (1995)
Fossil arbuscular mycorrhizae from the Early Devonian
T. Taylor (1995)
Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis.
J. Eisen (1998)
Molecular Evidence for the Early Colonization of Land by Fungi and Plants
D. Heckman (2001)
A Phosphate Transporter from Medicago truncatula Involved in the Acquisition of Phosphate Released by Arbuscular Mycorrhizal Fungi Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004861.
M. Harrison (2002)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
K. Katoh (2002)
a novel method for rapid multiple sequence alignment based on fast Fourier transform
K. Katoh (2002)
Disruption of the FATB Gene in Arabidopsis Demonstrates an Essential Role of Saturated Fatty Acids in Plant Growth Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.008946.
G. Bonaventure (2003)
MUSCLE: multiple sequence alignment with high accuracy and high throughput.
R. Edgar (2004)
Phylogenetic distribution and evolution of mycorrhizas in land plants
B. Wang (2005)
Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes.
A. Frenzel (2005)
URec: a system for unrooted reconciliation
P. Górecki (2007)
a system for unrooted reconciliation
P. Górecki (2007)
Arbuscular Mycorrhiza–Specific Signaling in Rice Transcends the Common Symbiosis Signaling Pathway[W]
C. Gutjahr (2008)
Mycorrhizal associations and other means of nutrition of vascular plants: understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis
M. Brundrett (2008)
Divergence of evolutionary ways among common sym genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway.
M. Banba (2008)
Arbuscular mycorrhiza: the mother of plant root endosymbioses
M. Parniske (2008)
The Medicago truncatula gene expression atlas web server
Ji He (2009)
Presence of three mycorrhizal genes in the common ancestor of land plants suggests a key role of mycorrhizas in the colonization of land by plants.
B. Wang (2010)
Two Medicago truncatula Half-ABC Transporters Are Essential for Arbuscule Development in Arbuscular Mycorrhizal Symbiosis[W]
Q. Zhang (2010)
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
M. Price (2010)
Mutualistic mycorrhiza-like symbiosis in the most ancient group of land plants.
Claire P Humphreys (2010)
Phylogenetic and experimental characterization of an acyl-ACP thioesterase family reveals significant diversity in enzymatic specificity and activity
Fuyuan Jing (2011)
The dawn of symbiosis between plants and fungi
M. Bidartondo (2011)
A Common Signaling Process that Promotes Mycorrhizal and Oomycete Colonization of Plants
Ertao Wang (2012)
A GRAS-Type Transcription Factor with a Specific Function in Mycorrhizal Signaling
E. Gobbato (2012)
DELLA proteins regulate arbuscule formation in arbuscular mycorrhizal symbiosis
Daniela S. Floss (2013)
Cell and developmental biology of arbuscular mycorrhiza symbiosis.
C. Gutjahr (2013)
An improved genome release (version Mt4.0) for the model legume Medicago truncatula
H. Tang (2014)
Abscisic Acid Promotion of Arbuscular Mycorrhizal Colonization Requires a Component of the PROTEIN PHOSPHATASE 2A Complex1[W][OPEN]
M. Charpentier (2014)
A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants
P. Favre (2014)
A DELLA protein complex controls the arbuscular mycorrhizal symbiosis in plants
Nan Yu (2014)
Fatty acid synthesis and lipid metabolism in the obligate biotrophic fungus Rhizophagus irregularis during mycorrhization of Lotus japonicus.
Vera Wewer (2014)
Comparative Phylogenomics Uncovers the Impact of Symbiotic Associations on Host Genome Evolution
P. Delaux (2014)
Suppression of Arbuscule Degeneration in Medicago truncatula phosphate transporter4 Mutants Is Dependent on the Ammonium Transporter 2 Family Protein AMT2;3
Florence Breuillin-Sessoms (2015)
EXO70I Is Required for Development of a Sub-domain of the Periarbuscular Membrane during Arbuscular Mycorrhizal Symbiosis
Xinchun Zhang (2015)
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
A. Kohler (2015)
Network of GRAS Transcription Factors Involved in the Control of Arbuscule Development in Lotus japonicus1[OPEN]
L. Xue (2015)
This paper is referenced by
Proteome adaptations under contrasting soil phosphate regimes of Rhizophagus irregularis engaged in a common mycorrhizal network.
G. Recorbet (2021)
Revisiting the architecture, biosynthesis and functional aspects of the plant cuticle: There is more scope
Vishalakshi Bhanot (2021)
Metabolomics Intervention towards Better Understanding of Plant Traits
Vinay Sharma (2021)
Unmasking Mildew Resistance Locus O.
Catherine N. Jacott (2021)
A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage
Héctor Montero (2021)
Important innate differences in determining symbiotic responsiveness in host and non-hosts of arbuscular mycorrhiza
Shalini Vasan (2021)
Plant evolution driven by interactions with symbiotic and pathogenic microbes
Pierre-Marc Delaux (2021)
Genetic variation and evolutionary history of a mycorrhizal fungus regulate the currency of exchange in symbiosis with the food security crop cassava
R. Savary (2020)
Agriculture and the Disruption of Plant-Microbial Symbiosis.
S. Porter (2020)
Cross-ecosystem transcriptomics identifies distinct genetic modules for nutrient acquisition in maize
Yusaku Sugimura (2020)
7 Genetics and Genomics Decipher Partner Biology in Arbuscular Mycorrhizas
L. Lanfranco (2020)
Unique and common traits in mycorrhizal symbioses
A. Genre (2020)
Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response[OPEN]
E. Baggs (2020)
An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages
Guru V. Radhakrishnan (2020)
Overview of Genomic Resources Available for Lupins with a Focus on Narrow-Leafed Lupin (Lupinus angustifolius)
Karam B. Singh (2020)
Constitutive overexpression of RAM1 increases arbuscule density during arbuscular mycorrhizal symbiosis in Brachypodium distachyon
L. M. Müller (2020)
A Roadmap toward Engineered Nitrogen-Fixing Nodule Symbiosis
R. Huisman (2020)
Breeding for resistance: can we increase crop resistance to pathogens without compromising the ability to accommodate beneficial microbes?
Alga Zuccaro (2020)
A mycorrhiza-specific H+ -ATPase is essential for arbuscule development and symbiotic phosphate and nitrogen uptake.
Junli Liu (2020)
Fatty Acyl Synthetases and Thioesterases in Plant Lipid Metabolism: Diverse Functions and Biotechnological Applications.
Rebecca S Kalinger (2020)
Mildew Locus O facilitates colonization by arbuscular mycorrhizal fungi in angiosperms
Catherine N. Jacott (2020)
Constitutive Overexpression of RAM1 Leads to an Increase in Arbuscule Density in Brachypodium distachyon1[OPEN]
L. Müller (2020)
VAPYRIN-like is required for development of the moss Physcomitrella patens
Ursina Rathgeb (2020)
A plant’s diet, surviving in a variable nutrient environment
G. Oldroyd (2020)
The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice
Jeongmin Choi (2020)
Arbuscular mycorrhiza, a fungal perspective
Jelle van Creij (2020)
Transcriptional responses to arbuscular mycorrhizal symbiosis development are conserved in the early divergent Marchantia paleacea
Mara Sgroi (2020)
Receptor-Like Kinases Sustain Symbiotic Scrutiny1[OPEN]
Chai Hao Chiu (2020)
The potential of arbuscular mycorrhizal fungi in C cycling: a review
Manoj Parihar (2020)
SNARE Complexity in Arbuscular Mycorrhizal Symbiosis
R. Huisman (2020)
A set of Arabidopsis genes involved in the accommodation of the downy mildew pathogen Hyaloperonospora arabidopsidis
M. K. Ried (2019)
Molecular dialogue between arbuscular mycorrhizal fungi and the nonhost plant Arabidopsis thaliana switches from initial detection to antagonism.
Iván Fernández (2019)See more