Online citations, reference lists, and bibliographies.
← Back to Search

Natural Variation Of Rice Strigolactone Biosynthesis Is Associated With The Deletion Of Two MAX1 Orthologs

C. Cardoso, Yanxia Zhang, Muhammad Jamil, Jo Hepworth, T. Charnikhova, S. Dimkpa, C. Meharg, M. Wright, Junwei Liu, Xiangbing Meng, Yonghong Wang, Jiayang Li, S. McCouch, O. Leyser, A. Price, H. Bouwmeester, C. Ruyter-Spira
Published 2014 · Biology, Medicine

Save to my Library
Download PDF
Analyze on Scholarcy Visualize in Litmaps
Share
Reduce the time it takes to create your bibliography by a factor of 10 by using the world’s favourite reference manager
Time to take this seriously.
Get Citationsy
Significance Strigolactones are a new class of plant hormones regulating plant shoot and root architecture in response to the environment. Also present in root exudates, strigolactones stimulate the germination of parasitic plant seeds. This report describes a genomic polymorphism—associated with the Indica/Japonica subspecies divide in rice that has a major impact on the biosynthesis of strigolactones, plant tillering, and germination of the parasitic plant Striga hermonthica—consisting of the deletion of two strigolactone biosynthetic genes orthologous to Arabidopsis MAX1. Both of these genes rescued the Arabidopsis max1-1 highly branched mutant phenotype and increased the strigolactone level when overexpressed in the Indica rice variety Bala. This finding is of great interest for plant physiologists, plant evolutionary biologists, and breeders. Rice (Oryza sativa) cultivar Azucena—belonging to the Japonica subspecies—exudes high strigolactone (SL) levels and induces high germination of the root parasitic plant Striga hermonthica. Consistent with the fact that SLs also inhibit shoot branching, Azucena is a low-tillering variety. In contrast, Bala, an Indica cultivar, is a low-SL producer, stimulates less Striga germination, and is highly tillered. Using a Bala × Azucena F6 population, a major quantitative trait loci—qSLB1.1—for the exudation of SL, tillering, and induction of Striga germination was detected on chromosome 1. Sequence analysis of the corresponding locus revealed a rearrangement of a 51- to 59-kbp stretch between 28.9 and 29 Mbp in the Bala genome, resulting in the deletion of two cytochrome P450 genes—SLB1 and SLB2—with high homology to the Arabidopsis SL biosynthesis gene, MAX1. Both rice genes rescue the Arabidopsis max1-1 highly branched mutant phenotype and increase the production of the SL, ent-2′-epi-5-deoxystrigol, when overexpressed in Bala. Furthermore, analysis of this region in 367 cultivars of the publicly available Rice Diversity Panel population shows that the rearrangement at this locus is a recurrent natural trait associated with the Indica/Japonica divide in rice.
This paper references
10.1016/0014-4827(68)90403-5
Nutrient requirements of suspension cultures of soybean root cells.
O. Gamborg (1968)
10.1360/YA1975-18-5-659
Establishment of an efficient medium for anther culture of rice through comparative experiments on the nitrogen sources
C. Chu (1975)
10.1046/J.1365-313X.1998.00343.X
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.
S. Clough (1998)
10.1046/J.1469-8137.1999.00467.X
Infection time and density influence the response of sorghum to the parasitic angiosperm Striga hermonthica.
A. L. Gurney (1999)
10.1007/s001220050007
A combined RFLP and AFLP linkage map of upland rice (Oryza sativa L.) used to identify QTLs for root-penetration ability
A. H. Price (2000)
Version 1
Cj Basten (2001)
10.1016/S0378-4290(02)00010-2
Upland rice grown in soil-filled chambers and exposed to contrasting water-deficit regimes: II. Mapping quantitative trait loci for root morphology and distribution
A. Price (2002)
10.1046/J.1469-8137.2003.00748.X
Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status
J. Wasaki (2003)
10.1101/GAD.260703
Molecular analysis of the LATERAL SUPPRESSOR gene in Arabidopsis reveals a conserved control mechanism for axillary meristem formation.
Thomas Greb (2003)
10.1046/J.1469-8137.2003.00865.X
Long-term increase in nitrogen supply alters above- and below-ground ectomycorrhizal communities and increases the dominance of Russula spp. in a temperate oak savanna.
P. Avis (2003)
10.1101/GAD.256603
MAX4 and RMS1 are orthologous dioxygenase-like genes that regulate shoot branching in Arabidopsis and pea.
Karim Sorefan (2003)
10.1007/BF00222910
Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers
M. Champoux (2004)
10.1007/BF00028910
A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome
A. Gleave (2004)
10.1016/j.cub.2004.06.061
MAX3/CCD7 Is a Carotenoid Cleavage Dioxygenase Required for the Synthesis of a Novel Plant Signaling Molecule
Jonathan Booker (2004)
10.1104/pp.105.061382
The Strigolactone Germination Stimulants of the Plant-Parasitic Striga and Orobanche spp. Are Derived from the Carotenoid Pathway1
R. Matúšová (2005)
10.1038/nature03608
Plant sesquiterpenes induce hyphal branching in arbuscular mycorrhizal fungi
K. Akiyama (2005)
10.1016/J.DEVCEL.2005.01.009
MAX1 encodes a cytochrome P450 family member that acts downstream of MAX3/4 to produce a carotenoid-derived branch-inhibiting hormone.
Jonathan Booker (2005)
10.1111/J.1469-8137.2005.01560.X
A novel form of resistance in rice to the angiosperm parasite Striga hermonthica.
A. Gurney (2006)
10.1111/J.1365-313X.2006.02916.X
The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds.
Junhuang Zou (2006)
10.1016/J.TIG.2007.08.012
New insights into the history of rice domestication.
M. J. Kovach (2007)
10.1111/J.1365-313X.2007.03210.X
DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
Tomotsugu Arite (2007)
10.1371/journal.pgen.0030133
Global Dissemination of a Single Mutation Conferring White Pericarp in Rice
M. Sweeney (2007)
10.1016/J.TPLANTS.2007.03.009
Rhizosphere communication of plants, parasitic plants and AM fungi.
H. Bouwmeester (2007)
10.1038/nature07271
Strigolactone inhibition of shoot branching
V. Gómez-Roldán (2008)
10.1111/j.1469-8137.2008.02568.x
A study on the susceptibility of rice cultivars to Striga hermonthica and mapping of Striga tolerance quantitative trait loci in rice.
K. Kaewchumnong (2008)
10.1038/nature07272
Inhibition of shoot branching by new terpenoid plant hormones
Mikihisa Umehara (2008)
10.1007/s10681-008-9833-z
Mapping of quantitative trait loci for seminal root morphology and gravitropic response in rice
G. Norton (2008)
10.1534/genetics.109.103002
Evolutionary History of GS3, a Gene Conferring Grain Length in Rice
Noriko Takano-Kai (2009)
10.1007/s00344-009-9122-7
Strigolactones’ Effect on Root Growth and Root-Hair Elongation May Be Mediated by Auxin-Efflux Carriers
H. Koltai (2009)
10.1105/tpc.109.065987
DWARF27, an Iron-Containing Protein Required for the Biosynthesis of Strigolactones, Regulates Rice Tiller Bud Outgrowth[W][OA]
H. Lin (2009)
10.1016/j.plantsci.2009.01.013
Establishment of a high efficiency Agrobacterium-mediated transformation system of rice (Oryza sativa L.).
Kenjirou Ozawa (2009)
10.1093/pcp/pcp091
d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers.
Tomotsugu Arite (2009)
10.1093/bioinformatics/btp324
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li (2009)
10.1002/ps.1713
Observations on the current status of Orobanche and Striga problems worldwide.
C. Parker (2009)
Panati. Available at http://panati.sourceforge.net
Mh Wright (2009)
10.1093/pcp/pcq084
Contribution of Strigolactones to the Inhibition of Tiller Bud Outgrowth under Phosphate Deficiency in Rice
Mikihisa Umehara (2010)
10.1104/pp.110.166645
Physiological Effects of the Synthetic Strigolactone Analog GR24 on Root System Architecture in Arabidopsis: Another Belowground Role for Strigolactones?1[C][W][OA]
C. Ruyter-Spira (2010)
10.1371/journal.pone.0010780
Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome
K. Zhao (2010)
10.1007/s00425-010-1310-y
Strigolactones affect lateral root formation and root-hair elongation in Arabidopsis
Y. Kapulnik (2010)
10.1093/bioinformatics/btp698
Fast and accurate long-read alignment with Burrows–Wheeler transform
Heng Li (2010)
10.1104/pp.110.164640
Strigolactones Are Transported through the Xylem and Play a Key Role in Shoot Architectural Response to Phosphate Deficiency in Nonarbuscular Mycorrhizal Host Arabidopsis1[C][W][OA]
W. Kohlen (2010)
Fast and accurate long-read alignment with BurrowsWheeler transform
H Li (2010)
10.1016/j.plantsci.2010.11.007
Strigolactones and root infestation by plant-parasitic Striga, Orobanche and Phelipanche spp.
C. Cardoso (2011)
10.1007/s00425-011-1520-y
Genetic variation in strigolactone production and tillering in rice and its effect on Striga hermonthica infection
M. Jamil (2011)
10.1038/ncomms1467
Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
K. Zhao (2011)
10.1038/nrm3088
Signal integration in the control of shoot branching
Malgorzata A. Domagalska (2011)
10.1111/j.1469-8137.2011.03850.x
Pre-attachment Striga hermonthica resistance of New Rice for Africa (NERICA) cultivars based on low strigolactone production.
M. Jamil (2011)
10.1371/journal.pgen.1002221
Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping
A. Famoso (2011)
10.1094/MPMI-01-11-0013
IPD3 controls the formation of nitrogen-fixing symbiosomes in pea and Medicago Spp.
E. Ovchinnikova (2011)
Physiological effects of the synthetic strigolactone analog GR24 on root system architecture in Arabidopsis: Another belowground role for strigolactones? Plant Physiol 155(2):721–734
C Ruyter-Spira (2011)
10.3389/fpls.2011.00115
The Expression of Petunia Strigolactone Pathway Genes is Altered as Part of the Endogenous Developmental Program
R. S. Drummond (2012)
10.1186/1939-8433-6-4
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Y. Kawahara (2012)
10.1111/j.1469-8137.2012.04261.x
Strigolactones affect development in primitive plants. The missing link between plants and arbuscular mycorrhizal fungi?
C. Ruyter-Spira (2012)
10.1016/j.cub.2012.08.007
DAD2 Is an α/β Hydrolase Likely to Be Involved in the Perception of the Plant Branching Hormone, Strigolactone
C. Hamiaux (2012)
10.1126/science.1218094
The Path from β-Carotene to Carlactone, a Strigolactone-Like Plant Hormone
A. Alder (2012)
2009–2012) Panati. Available at http://panati.sourceforge.net
MH Wright (2012)
10.1104/pp.112.211383
A Role for MORE AXILLARY GROWTH1 (MAX1) in Evolutionary Diversity in Strigolactone Signaling Upstream of MAX21[C][W][OA]
Richard J. Challis (2013)
10.1093/mp/sss139
Confirming Stereochemical Structures of Strigolactones Produced by Rice and Tobacco
Xiaonan Xie (2013)
10.1073/pnas.1304354110
3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
C. Topp (2013)
10.1093/pcp/pcs183
Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics
H. Sakai (2013)



This paper is referenced by
10.1016/j.cell.2021.04.046
Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
Peng Qin (2021)
10.1002/9781119644798.CH6
Rhizosphere Engineering
R. Mishra (2021)
10.1038/s41598-021-82897-8
CRISPR/Cas9 mediated mutagenesis of MORE AXILLARY GROWTH 1 in tomato confers resistance to root parasitic weed Phelipanche aegyptiaca
V. K. Bari (2021)
10.1016/J.CJ.2021.03.014
Exploration of rice yield potential: Decoding agronomic and physiological traits
Gengmi Li (2021)
10.3389/fpls.2021.662025
Overexpression of a Cytochrome P450 Monooxygenase Involved in Orobanchol Biosynthesis Increases Susceptibility to Fusarium Head Blight
Valentin Changenet (2021)
10.1002/9781119552154.ch16
Strigolactones in Overcoming Environmental Stresses
Megha D. Bhatt (2020)
10.3390/metabo10110425
Integrative Metabolomic and Transcriptomic Analyses Reveal Metabolic Changes and Its Molecular Basis in Rice Mutants of the Strigolactone Pathway
Xiujuan Zhou (2020)
10.1186/s13007-020-00669-3
An improved strategy to analyse strigolactones in complex sample matrices using UHPLC–MS/MS
Kristýna Floková (2020)
10.1016/b978-0-12-818204-8.00019-9
Phytohormonal signaling under abiotic stress
Zahra Souri (2020)
10.1016/j.phytochem.2020.112349
Chemical identification of 18-hydroxycarlactonoic acid as an LjMAX1 product and in planta conversion of its methyl ester to canonical and non-canonical strigolactones in Lotus japonicus.
Narumi Mori (2020)
10.1007/s00425-020-03390-6
CYP722C from Gossypium arboreum catalyzes the conversion of carlactonoic acid to 5-deoxystrigol
T. Wakabayashi (2020)
10.1101/2020.08.12.248138
Diverse roles of MAX1 homologues in rice
M. Marzec (2020)
10.1016/j.molp.2020.10.001
ζ-Carotene Isomerase Suppresses Tillering in Rice through the Coordinated Biosynthesis of Strigolactone and Abscisic Acid.
Xue Liu (2020)
10.1007/978-981-15-6949-4_4
Role of Metagenomics in Deciphering the Microbial Communities Associated with Rhizosphere of Economically Important Plants
P. Jha (2020)
10.1016/j.molp.2020.03.009
A strigolactones biosynthesis gene contributed to the Green Revolution in rice.
Yuexing Wang (2020)
10.1038/s41467-020-16021-1
The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice
Jeongmin Choi (2020)
10.1007/978-3-030-37510-2_21
Metabolomics for Rice Grain Quality
F. Chaves (2020)
10.1105/tpc.20.00123
Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness[OPEN]
Jianshu Zheng (2020)
10.15244/pjoes/108687
The Role of New Members of Phytohormones in Plant Amelioration under Abiotic Stress with an Emphasis on Heavy Metals
A. Emamverdian (2020)
10.3390/genes11111348
Diverse Roles of MAX1 Homologues in Rice
M. Marzec (2020)
10.1002/JPLN.201800373
Genotypic differences in shoot silicon concentration and the impact on grain arsenic concentration in rice
P. Talukdar (2019)
10.1007/978-3-030-12153-2_3
Strigolactones and Parasitic Plants
M. Vurro (2019)
Genotypic differences in shoot silicon content and the impact on grain arsenic accumulation in rice
P. Talukdar (2019)
10.1101/cshperspect.a034645
The Role of Dwarfing Traits in Historical and Modern Agriculture with a Focus on Rice.
Ángel Ferrero-Serrano (2019)
Identification des bases génétiques associées à la variation naturelle des interactions plante-plante chez Arabidopsis thaliana
C. Libourel (2019)
10.1007/978-3-030-12153-2
Strigolactones - Biology and Applications
H. Koltai (2019)
10.1038/s41598-019-47893-z
CRISPR/Cas9-mediated mutagenesis of CAROTENOID CLEAVAGE DIOXYGENASE8 in tomato provides resistance against the parasitic weed Phelipanche aegyptiaca
V. K. Bari (2019)
10.1093/aob/mcz100
Strigolactones and their crosstalk with other phytohormones.
L. O. Omoarelojie (2019)
10.1111/tpj.14482
Comparative analysis of metabolome of rice seeds at three developmental stages using a recombinant inbred line population
Kang Li (2019)
10.3389/fpls.2019.00633
Spatial Effects and GWA Mapping of Root Colonization Assessed in the Interaction Between the Rice Diversity Panel 1 and an Arbuscular Mycorrhizal Fungus
H. Davidson (2019)
10.1111/pbi.13228
Knockout of two BnaMAX1 homologs by CRISPR/Cas9‐targeted mutagenesis improves plant architecture and increases yield in rapeseed (Brassica napus L.)
M. Zheng (2019)
10.1111/tpj.14097
Metabolic GWAS-based dissection of genetic bases underlying the diversity of plant metabolism.
Chuanying Fang (2019)
See more
Semantic Scholar Logo Some data provided by SemanticScholar