← Back to Search
MaxBench: Evaluation Of Sequence And Structure Comparison Methods
Raphaël Leplae, T. Hubbard
Published 2002 · Computer Science, Medicine
Download PDFAnalyze on Scholarcy
SUMMARY MaxBench is a web-based system available for evaluating the results of sequence and structure comparison methods, based on the SCOP protein domain classification. The system makes it easy for developers to both compare the overall performance of their methods to standard algorithms and investigate the results of individual comparisons. AVAILABILITY http://www.sanger.ac.uk/Users/lp1/MaxBench/
This paper references
Improved tools for biological sequence comparison.
W. Pearson (1988)
Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships.
S. Brenner (1998)
SCOP: a structural classification of proteins database for the investigation of sequences and structures.
A. Murzin (1995)
Evaluation of PSI‐BLAST alignment accuracy in comparison to structural alignments
I. Friedberg (2000)
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
F. Domingues (2000)
Benchmarking PSI-BLAST in genome annotation.
A. Mueller (1999)
Identification of common molecular subsequences.
T. Smith (1981)
Do aligned sequences share the same fold? 1 1 Edited by F. E. Cohen
R. Abagyan (1997)
Sequence to structure alignment in comparative modeling using PrISM
A. Yang (1999)
Gapped BLAST and PSIBLAST: a new generation of protein database search programs
W. Miller (1997)
Gapped BLAST and PSI-BLAST: A new
D. Lipman (1997)
Identification of related proteins on family, superfamily and fold level.
E. Lindahl (2000)
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
I. Shindyalov (1998)
The ASTRAL compendium for protein structure and sequence analysis
S. Brenner (2000)
The FSSP database of structurally aligned protein fold families.
L. Holm (1994)
Large‐scale comparison of protein sequence alignment algorithms with structure alignments
J. Michael Sauder (2000)
Do aligned sequences share the same fold?
R. Abagyan (1997)
This paper is referenced by
Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score
S. B. Pandit (2008)
Comparing and modeling protein structure
M. Levitt (2004)
ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information
Daniel Barthel (2007)
Current Awareness on Comparative and Functional Genomics
MUSCLE: multiple sequence alignment with high accuracy and high throughput.
R. Edgar (2004)
Comparative and Functional Genomics Vol 3 Pt 5
Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.
R. Kolodny (2005)
Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction.
R. Kolodny (2006)
Protein Structure Prediction as a Systems Problem
D. Xu (2007)
TM-align: a protein structure alignment algorithm based on the TM-score
Y. Zhang (2005)
The accuracy of protein structure alignment servers
Naeem Aslam (2016)