Online citations, reference lists, and bibliographies.
← Back to Search

MaxBench: Evaluation Of Sequence And Structure Comparison Methods

Raphaël Leplae, T. Hubbard
Published 2002 · Computer Science, Medicine

Cite This
Download PDF
Analyze on Scholarcy
Share
SUMMARY MaxBench is a web-based system available for evaluating the results of sequence and structure comparison methods, based on the SCOP protein domain classification. The system makes it easy for developers to both compare the overall performance of their methods to standard algorithms and investigate the results of individual comparisons. AVAILABILITY http://www.sanger.ac.uk/Users/lp1/MaxBench/
This paper references
10.1073/PNAS.85.8.2444
Improved tools for biological sequence comparison.
W. Pearson (1988)
10.1073/PNAS.95.11.6073
Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships.
S. Brenner (1998)
10.1016/S0022-2836(05)80134-2
SCOP: a structural classification of proteins database for the investigation of sequences and structures.
A. Murzin (1995)
10.1110/PS.9.11.2278
Evaluation of PSI‐BLAST alignment accuracy in comparison to structural alignments
I. Friedberg (2000)
10.1006/JMBI.2000.3615
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
F. Domingues (2000)
10.1006/JMBI.1999.3233
Benchmarking PSI-BLAST in genome annotation.
A. Mueller (1999)
10.1016/0022-2836(81)90087-5
Identification of common molecular subsequences.
T. Smith (1981)
Do aligned sequences share the same fold? 1 1 Edited by F. E. Cohen
R. Abagyan (1997)
10.1002/(SICI)1097-0134(1999)37:3+<66::AID-PROT10>3.0.CO;2-K
Sequence to structure alignment in comparative modeling using PrISM
A. Yang (1999)
Gapped BLAST and PSIBLAST: a new generation of protein database search programs
W. Miller (1997)
Gapped BLAST and PSI-BLAST: A new
D. Lipman (1997)
10.1006/JMBI.1999.3377
Identification of related proteins on family, superfamily and fold level.
E. Lindahl (2000)
10.1093/PROTEIN/11.9.739
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
I. Shindyalov (1998)
10.1093/nar/28.1.254
The ASTRAL compendium for protein structure and sequence analysis
S. Brenner (2000)
The FSSP database of structurally aligned protein fold families.
L. Holm (1994)
10.1002/(SICI)1097-0134(20000701)40:1<6::AID-PROT30>3.0.CO;2-7
Large‐scale comparison of protein sequence alignment algorithms with structure alignments
J. Michael Sauder (2000)
10.1006/JMBI.1997.1287
Do aligned sequences share the same fold?
R. Abagyan (1997)



This paper is referenced by
Semantic Scholar Logo Some data provided by SemanticScholar