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Genomewide Analysis Of Biomass Responses To Water Withholding In Young Plants Of Maize Inbred Lines With Expired Plant Variety Protection Certificate

Maja Mazur, Andrija Brkić, Domagoj Simic, Josip Brkić, Antun Jambrović, Zvonimir Zdunić, Vlatko Galic
Published 2019 · Biology
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Patterns of seasonal variations in rainfall are changing which affects rain-fed agricultural areas. Water deficit during the early vegetative growth poses threat as it causes variability in plant development, makes plant susceptible to other stresses and deteriorates the stands. Plant’s responses to water deficit are reflected in biomass traits which represent the morpho-physiological adjustments of plant to new conditions. The aims of this study were to assess the biomass responses of maize inbred lines with expired plant variety protection certificate that are freely distributed worldwide using genomewide analysis approach. The collection of 109 maize inbred lines, genotyped using genotyping-by-sequencing, was planted in controlled conditions (16/8 day/night, 25°C, 50% RH, 200 μMol/m2/s) in trays filled with soil in three replicates. Plants in control (C) were watered every two days with 8 mlH2O, while watering was stopped for 10 days in water withholding (WW) treatment. Fourteen days old plants were harvested and fresh weight (FW), dry weight (DW) and dry matter content (DMC, % of FW) were measured. Different responses to WW were detected in two genetic subgroups: Stiff Stalk and Non-Stiff Stalk. Totally 29 QTLs were detected, and it was shown that genetic regulation of DMC is different than regulation of FW and DW. This was further supported with correlations of rrBLUP marker effects among the traits. It was concluded that measurements of biomass traits in this manner are fast and reliable indicator of plant’s response to water deficit and can be used for effective screening of breeding progenies.
This paper references
Analysis of Fusarium ear rot and fumonisin contamination in testcrosses of a maize biparental population
Vlatko Galic (2019)
Avoiding the high Bonferroni penalty in genome-wide association studies.
Xiaoyi Gao (2009)
PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun M Purcell (2007)
Regulatory Shifts in Plastid Transcription Play a Key Role in Morphological Conversions of Plastids during Plant Development
Monique Liebers (2017)
Genome-wide transcriptome analysis of two maize inbred lines under drought stress
Jun Zheng (2009)
Genetic and germ plasm stocks worth conserving.
Major Goodman (1990)
GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research
Rodney Peakall (2006)
Genome-wide atlas of transcription during maize development.
Rajandeep S. Sekhon (2011)
Genome-Wide Analysis of Yield in Europe: Allelic Effects Vary with Drought and Heat Scenarios1[OPEN]
Emilie J. Millet (2016)
Caracterización molecular de arveja arbustiva (Pisum sativum L) en la zona cerealista del departamento de Nariño, Colombia
Duque Zapata (2020)
Involvement of HLS1 in sugar and auxin signaling in Arabidopsis leaves.
Masaaki Ohto (2006)
Genetic Composition of Contemporary U.S. Commercial Dent Corn Germplasm
Mark A Mikel (2011)
The disadvantages of being a hybrid during drought: A combined analysis of plant morphology, physiology and leaf proteome in maize
Dana Holá (2017)
Genomic Selection for Drought Tolerance Using Genome-Wide SNPs in Maize
Mittal Shikha (2017)
Abiotic stress responses in plants: roles of calmodulin-regulated proteins
Amardeep Singh Virdi (2015)
Comprehensive genotyping of the USA national maize inbred seed bank
M. Cinta Romay (2013)
Uncertainty in weather and climate prediction
Julia M. Slingo (2011)
Breeding Technologies to Increase. Science (80-)
M Tester (2010)
Screening for drought tolerance of maize hybrids by multi-scale analysis of root and shoot traits at the seedling stage.
Viktoriya Avramova (2016)
RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation
Sipla Aggarwal (2018)
Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants.
Sarvajeet Singh Gill (2010)
Inference of Population Structure
JK Pritchard (2000)
Breeding Technologies to Increase Crop Production in a Changing World
Mark Tester (2010)
Evaluation of Temperature and Precipitation Trends and Long-Term Persistence in CMIP5 Twentieth-Century Climate Simulations
Subodh Kumar (2013)
Molecular marker diversity among current and historical maize inbreds
Hsiao-feng Lu (2001)
Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP
Jeffrey B. Endelman (2011)
Global Precipitation Trends across Spatial Scales Using Satellite Observations
Phu Nguyen (2017)
Drought Tolerance in Maize: Indirect Selection through Secondary Traits versus Genomewide Selection
Cathrine Ziyomo (2013)
The Physiological Basis of Drought Tolerance in Crop Plants: A Scenario-Dependent Probabilistic Approach.
François Tardieu (2018)
Genetic Correlations Between Photosynthetic and Yield Performance in Maize Are Different Under Two Heat Scenarios During Flowering
Vlatko Galic (2019)
Genetic Enhancement of Crops for Tolerance to Abiotic Stress: Mechanisms and Approaches, Vol. I
Kishan Gopal Ramawat (2019)
What should students in plant breeding know about the statistical aspects of genotype × Environment interactions?
Fred van Eeuwijk (2016)
Drought-tolerant and drought-sensitive genotypes of maize (Zea mays L.) differ in contents of endogenous brassinosteroids and their drought-induced changes
Lenka Tumova (2018)
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.
Guillaume Evanno (2005)
Characterization of maize cytochrome P450 monooxygenases induced in response to safeners and bacterial pathogens.
Michael W Persans (2001)
Package “lme4.
D Bates (2014)
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.
Naama M Kopelman (2015)
A Guide to Genome-Wide Association Mapping in Plants.
Liana T. Burghardt (2017)
LESION SIMULATING DISEASE1 Interacts with Catalases to Regulate Hypersensitive Cell Death in Arabidopsis1[C][W]
Yansha Li (2013)
POLYGALACTURONASE INVOLVED IN EXPANSION3 Functions in Seedling Development, Rosette Growth, and Stomatal Dynamics in Arabidopsis thaliana[OPEN]
Yue Rui (2017)
Package “agricolae.
Mendiburu F De (2019)
Genetic relatedness of previously Plant-Variety-Protected commercial maize inbreds
Travis J Beckett (2017)
Panzea: an update on new content and features
Payan Canaran (2008)
Evolution of North American dent corn from public to proprietary germplasm
Mark A Mikel (2006)
Greater Sensitivity to Drought Accompanies Maize Yield Increase in the U.S. Midwest
David B. Lobell (2014)
Genome-wide association studies in plants: the missing heritability is in the field
Benjamin Brachi (2011)
Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings
Xianglan Wang (2016)
Breeding Technologies to Increase
M. Tester (2010)
Genotype × environment interaction and adaptation
Ignacio Romagosa (1993)
Temporal dynamics of maize plant growth, water use, and leaf water content using automated high throughput RGB and hyperspectral imaging
Yufeng Ge (2016)
Semaphorin3A induces nerve regeneration in the adult cornea-a switch from its repulsive role in development
Min Zhang (2018)
MaizeGDB update: new tools, data and interface for the maize model organism database
Carson M. Andorf (2016)
Genome-wide association studies of doubled haploid exotic introgression lines for root system architecture traits in maize (Zea mays L.).
Darlene L. Sanchez (2018)
Relationships among kernel weight, early vigor, and growth in maize
Pedro Revilla Temiño (1999)
Synergisms between microbial pathogens in plant disease complexes: a growing trend
Jay Ram Lamichhane (2015)
Genetic architecture of plant stress resistance: multi‐trait genome‐wide association mapping
Manus P. M. Thoen (2017)
Encyclopedia of Sustainability Science and Technology
Robert A. Meyers (2012)
Genomic prediction and GWAS of Gibberella ear rot resistance traits in dent and flint lines of a public maize breeding program
Sen Han (2017)
An introduction to: Business games
D. A. Lloyd (1978)
Análisis de rutas biológicas y estudio de asociación amplia del genoma identificaron factores genéticos del cromosoma 10 asociados con la variación de antocianinas en papa
Parra Galindo (2020)
A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms.
Xiaoyi Gao (2008)
Drought Stress in Maize (Zea mays L.)
Muhammad Tariq Aslam (2015)
TASSEL: software for association mapping of complex traits in diverse samples
Peter J. Bradbury (2007)
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
Robert John Elshire (2011)
Enhancing genomic prediction with genome-wide association studies in multiparental maize populations
Yang Bian (2017)
Are seedlings from small seeds always inferior to seedlings from large seeds? Effects of seed biomass on seedling growth in Pastinaca sativa L.
Stephen D. Hendrix (1991)
The Role of Cytochrome P450 Monooxygenases in Plant-Insect Interactions
Mary A. Schuler (1996)
Sequence of drought response of maize seedlings in drying soil
Urs Schmidhalter (1998)
Genomics-Enabled Next-Generation Breeding Approaches for Developing System-Specific Drought Tolerant Hybrids in Maize
T. Nepolean (2018)
Inference of population structure using multilocus genotype data.
Jonathan K. Pritchard (2000)
R Development Core Team (2010): R: A language and environment for statistical computing
Peter Dalgaard (2010)
Grain yield of B73 × Mo17-type maize hybrids from different periods of breeding
Milisav Stojaković (2010)

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