Pansy (Viola ×wittrockiana Gams.), petunia (Petunia ×hybrida hort. Vilm.), and gerbera daisy (Gerbera jamesonii Bol. ex Adlam.) plants were grown hydroponically to characterize the deficiency symptoms caused by the absence of calcium (Ca) or boron (B). Primary symptoms occurred on the youngest tissue for both elements, but distinct differences between Ca and B deficiencies were observed. Plants responding to Ca deficiency exhibited discoloration and upward rolling of leaves and ultimately necrosis. Plants responding to B deficiency exhibited minor chlorosis, upward curling, and thickening of leaves, distorted meristems, and strap-like leaves. A second experiment investigated how a temporary disruption of Ca or B affects the plant throughout the crop cycle. Either Ca or B was removed from the nutrient solution for a 7-day period from Day 15 to Day 21, Day 22 to Day 28, or Day 29 to Day 35 after sowing. After the 7-day disruption, the respective element was reintroduced to the plants. Regardless of when the plants were deprived of Ca or B, the symptoms of the respective deficiency were present at the end of the experiment. These studies have shown that a temporary disruption of either Ca or B can cause lasting symptoms throughout the plug production cycle. Also, the symptoms that have been observed in plug production were most similar to those symptoms caused by B deficiency, not Ca deficiency.