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In Silico Analysis Of The Genes Encoding Proteins That Are Involved In The Biosynthesis Of The RMS/MAX/D Pathway Revealed New Roles Of Strigolactones In Plants
M. Marzec, A. Muszynska
Published 2015 · Biology, Medicine
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Strigolactones were described as a new group of phytohormones in 2008 and since then notable large number of their functions has been uncovered, including the regulation of plant growth and development, interactions with other organisms and a plant’s response to different abiotic stresses. In the last year, investigations of the strigolactone biosynthesis pathway in two model species, Arabidopsis thaliana and Oryza sativa, resulted in great progress in understanding the functions of four enzymes that are involved in this process. We performed in silico analyses, including the identification of the cis-regulatory elements in the promoters of genes encoding proteins of the strigolactone biosynthesis pathway and the identification of the miRNAs that are able to regulate their posttranscriptional level. We also searched the databases that contain the microarray data for the genes that were analyzed from both species in order to check their expression level under different growth conditions. The results that were obtained indicate that there are universal regulations of expression of all of the genes that are involved in the strigolactone biosynthesis in Arabidopsis and rice, but on the other hand each stage of strigolactone production may be additionally regulated independently. This work indicates the presence of crosstalk between strigolactones and almost all of the other phytohormones and suggests the role of strigolactones in the response to abiotic stresses, such as wounding, cold or flooding, as well as in the response to biotic stresses.
This paper references
Available Online at
K. Shadan (1600)
Germination of Witchweed (Striga lutea Lour.): Isolation and Properties of a Potent Stimulant
C. Cook (1966)
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
K. Higo (1999)
Evidence for an Important Role of WRKY DNA Binding Proteins in the Regulation of NPR1 Gene Expression
Diqiu Yu (2001)
Prediction of Plant MicroRNA Targets
Matthew W Rhoades (2002)
Members of the Arabidopsis WRKY group III transcription factors are part of different plant defense signaling pathways.
M. Kalde (2003)
TRANSFAC®: transcriptional regulation, from patterns to profiles
V. Matys (2003)
Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response
J. Dong (2004)
Development of flooding-tolerant Arabidopsis thaliana by autoregulated cytokinin production
J. Zhang (2004)
MAX3/CCD7 Is a Carotenoid Cleavage Dioxygenase Required for the Synthesis of a Novel Plant Signaling Molecule
Jonathan Booker (2004)
The Strigolactone Germination Stimulants of the Plant-Parasitic Striga and Orobanche spp. Are Derived from the Carotenoid Pathway1
R. Matúšová (2005)
Plant sesquiterpenes induce hyphal branching in arbuscular mycorrhizal fungi
K. Akiyama (2005)
Detection and preliminary analysis of motifs in promoters of anaerobically induced genes of different plant species.
B. Mohanty (2005)
Suppression of tiller bud activity in tillering dwarf mutants of rice.
S. Ishikawa (2005)
MAX1 encodes a cytochrome P450 family member that acts downstream of MAX3/4 to produce a carotenoid-derived branch-inhibiting hormone.
Jonathan Booker (2005)
The Branching Gene RAMOSUS1 Mediates Interactions among Two Novel Signals and Auxin in Pea
E. Foo (2005)
Phosphorus deficiency in red clover promotes exudation of orobanchol, the signal for mycorrhizal symbionts and germination stimulant for root parasites
K. Yoneyama (2006)
The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds.
Junhuang Zou (2006)
Nitrogen deficiency as well as phosphorus deficiency in sorghum promotes the production and exudation of 5-deoxystrigol, the host recognition signal for arbuscular mycorrhizal fungi and root parasites
K. Yoneyama (2007)
OsWRKY71, a rice transcription factor, is involved in rice defense response.
X. Liu (2007)
DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
Tomotsugu Arite (2007)
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.
J. Kilian (2007)
An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets
D. Winter (2007)
Strigolactone inhibition of shoot branching
V. Gómez-Roldán (2008)
PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups
Wen-Chi Chang (2008)
Inhibition of shoot branching by new terpenoid plant hormones
Mikihisa Umehara (2008)
Tomato strigolactones are derived from carotenoids and their biosynthesis is promoted by phosphate starvation.
J. A. López-Ráez (2008)
Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance
Linga R Gutha (2008)
Origin, Biogenesis, and Activity of Plant MicroRNAs
O. Voinnet (2009)
Interactions between Auxin and Strigolactone in Shoot Branching Control1[C][OA]
A. Hayward (2009)
Characterization and expression profiles of miRNAs in rice seeds
Liang-Jiao Xue (2009)
DWARF27, an Iron-Containing Protein Required for the Biosynthesis of Strigolactones, Regulates Rice Tiller Bud Outgrowth[W][OA]
H. Lin (2009)
Structure and function of natural and synthetic signalling molecules in parasitic weed germination.
B. Zwanenburg (2009)
MicroRNA biogenesis and function in higher plants
Jae-Hoon Jung (2009)
Vazquez, F. miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves
A Si-Ammour (2009)
The strigolactone story.
Xiaonan Xie (2010)
Contribution of Strigolactones to the Inhibition of Tiller Bud Outgrowth under Phosphate Deficiency in Rice
Mikihisa Umehara (2010)
Strigolactones Negatively Regulate Mesocotyl Elongation in Rice during Germination and Growth in Darkness
Z. Hu (2010)
Impact of Arbuscular Mycorrhizal Symbiosis on Plant Response to Biotic Stress: The Role of Plant Defence Mechanisms
M. J. Pozo (2010)
Strigolactones affect lateral root formation and root-hair elongation in Arabidopsis
Y. Kapulnik (2010)
Strigolactones enhance competition between shoot branches by dampening auxin transport
S. Crawford (2010)
New genes in the strigolactone-related shoot branching pathway.
C. Beveridge (2010)
First indications for the involvement of strigolactones on nodule formation in alfalfa (Medicago sativa)
M. Soto (2010)
Molecular evolution of two consecutive carotenoid cleavage dioxygenase genes in strigolactone biosynthesis in plants.
R. Wang (2011)
Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
She Tang (2011)
Antagonistic Action of Strigolactone and Cytokinin in Bud Outgrowth Control1[W]
E. Dun (2011)
miR393 and Secondary siRNAs Regulate Expression of the TIR1/AFB2 Auxin Receptor Clade and Auxin-Related Development of Arabidopsis Leaves1[W][OA]
Azeddine Si-Ammour (2011)
Plant Transcription Factors
L. Yuan (2011)
How do nitrogen and phosphorus deficiencies affect strigolactone production and exudation?
K. Yoneyama (2011)
Strigolactones are regulators of root development.
H. Koltai (2011)
Strigolactones regulate protonema branching and act as a quorum sensing-like signal in the moss Physcomitrella patens
Hélène Proust (2011)
AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
A. Yilmaz (2011)
Strigolactone signaling is required for auxin-dependent stimulation of secondary growth in plants
J. Agustí (2011)
The Arabidopsis Ortholog of Rice DWARF27 Acts Upstream of MAX1 in the Control of Plant Development by Strigolactones1[C][W][OA]
M. Waters (2012)
The Path from β-Carotene to Carlactone, a Strigolactone-Like Plant Hormone
A. Alder (2012)
The Role of Strigolactones in Nutrient-Stress Responses in Plants
M. Marzec (2013)
In Silico Analysis of a MRP Transporter Gene Reveals Its Possible Role in Anthocyanins or Flavonoids Transport in Oryze sativa
Qin-Long Zhu (2013)
Nitrogen and phosphorus fertilization negatively affects strigolactone production and exudation in sorghum
K. Yoneyama (2013)
Emerging roles of microRNAs in the mediation of drought stress response in plants.
Y. Ding (2013)
Auxin signal transcription factor regulates expression of the brassinosteroid receptor gene in rice.
T. Sakamoto (2013)
Genome-wide identification and analysis of microRNA responding to long-term waterlogging in crown roots of maize seedlings.
Lihong Zhai (2013)
The biology of strigolactones.
C. Ruyter-Spira (2013)
Confirming Stereochemical Structures of Strigolactones Produced by Rice and Tobacco
Xiaonan Xie (2013)
Arbuscular mycorrhizal symbiosis influences strigolactone production under salinity and alleviates salt stress in lettuce plants.
R. Aroca (2013)
Strigolactone Can Promote or Inhibit Shoot Branching by Triggering Rapid Depletion of the Auxin Efflux Protein PIN1 from the Plasma Membrane
Naoki Shinohara (2013)
Regulation of Drought Tolerance by the F-Box Protein MAX2 in Arabidopsis1[C][W][OPEN]
Qingyun Bu (2013)
Strigolactones and the regulation of pea symbioses in response to nitrate and phosphate deficiency.
E. Foo (2013)
Rice heterotrimeric G-protein alpha subunit (RGA1): in silico analysis of the gene and promoter and its upregulation under abiotic stress.
Dinesh Kumar Yadav (2013)
A salicylic acid-induced rice (Oryza sativa L.) transcription factor OsWRKY77 is involved in disease resistance of Arabidopsis thaliana.
A. Lan (2013)
RiceXPro Version 3.0: expanding the informatics resource for rice transcriptome
Y. Sato (2013)
Strigolactones Stimulate Internode Elongation Independently of Gibberellins1[C][W]
Alexandre de Saint Germain (2013)
Positive regulatory role of strigolactone in plant responses to drought and salt stress
C. Ha (2013)
Carlactone-independent seedling morphogenesis in Arabidopsis.
A. Scaffidi (2013)
ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana☆
M. K. Jensen (2013)
The interaction between strigolactones and other plant hormones in the regulation of plant development
Xi Cheng (2013)
A Dof Transcription Factor, SCAP1, Is Essential for the Development of Functional Stomata in Arabidopsis
J. Negi (2013)
Diverse roles of strigolactones in plant development.
P. Brewer (2013)
Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis
D. Sang (2014)
miRBase: annotating high confidence microRNAs using deep sequencing data
Ana Kozomara (2014)
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
A. Mathelier (2014)
Strigolactone Involvement in Root Development, Response to Abiotic Stress, and Interactions with the Biotic Soil Environment
Y. Kapulnik (2014)
Carlactone is an endogenous biosynthetic precursor for strigolactones
Yoshiya Seto (2014)
‘In silico expression analysis’, a novel PathoPlant web tool to identify abiotic and biotic stress conditions associated with specific cis-regulatory sequences
Julio C. Bolívar (2014)
Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis.
Yanxia Zhang (2014)
Strigolactones, Karrikins, and More: Newly Discovered Molecules Light Up Plant Signaling
X. Cui (2014)
Impacts of light and temperature on shoot branching gradient and expression of strigolactone synthesis and signalling genes in rose.
S. Djennane (2014)
Arabidopsis thaliana peroxidases involved in lignin biosynthesis: in silico promoter analysis and hormonal regulation.
Joaquín Herrero (2014)
Strigolactone analog GR24 triggers changes in PIN2 polarity, vesicle trafficking and actin filament architecture.
Nirali Pandya-Kumar (2014)
Strigolactones are involved in phosphate- and nitrate-deficiency-induced root development and auxin transport in rice
Huwei Sun (2014)
Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs
Catarina Cardoso (2014)
Carlactone is converted to carlactonoic acid by MAX1 in Arabidopsis and its methyl ester can directly interact with AtD14 in vitro
Satoko Abe (2014)
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
Jinpu Jin (2014)
Strigolactones and the control of plant development: lessons from shoot branching.
Tanya Waldie (2014)
Available online: http://bar.utoronto.ca/efp
Browser Arabidopsis Efp (2014)
Available online: http://arabidopsis.med.ohio-state
Available online: http://www
Available online: http://www.dna.affrc.go
Available online: http://jaspar.genereg.net (accessed on 15–30
Available online: http://www.gene-regulation.com/cgi-bin/pub/ databases/transfac
Transfac Database (2014)
Rice Annotation Project Database Available online: http://rapdblegacy
Available online: http://www
Available online: http://ricexpro
MicroRNA biogenesis factor DRB1 is a phosphorylation target of mitogen activated protein kinase MPK3 in both rice and Arabidopsis
B. Raghuram (2015)
In Silico Expression Analysis.
Julio C. Bolívar (2016)
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This paper is referenced by
Strigolactones: A Novel Carotenoid-Derived Phytohormone – Biosynthesis, Transporters, Signalling, and Mechanisms in Abiotic Stress
A. Hossain (2021)
Piriformospora indica affect drought tolerance by regulation of genes expression and some morphophysiological parameters in tomato (Solanum lycopersicum L.)
M. Azizi (2021)
Mechanistic Insights into Strigolactone Biosynthesis, Signaling, and Regulation During Plant Growth and Development
Kaiser Iqbal Wani (2020)
Strigolactones in Overcoming Environmental Stresses
Megha D. Bhatt (2020)
Diverse roles of MAX1 homologues in rice
M. Marzec (2020)
In-silico transcriptome study of the rice (Oryza sativa) strigolactone-deficient (dwarf17) mutant reveals a potential link of strigolactones with various stress-associated pathways
Fahad Nasir (2020)
Barley strigolactone signaling mutant hvd14.d reveals the role of strigolactones in ABA-dependent response to drought.
M. Marzec (2020)
Role of Strigolactones: Signalling and Crosstalk with Other Phytohormones
M. Faizan (2020)
Diverse Roles of MAX1 Homologues in Rice
M. Marzec (2020)
A novel strigolactone-miR156 module controls stomatal behaviour during drought recovery.
I. Visentin (2020)
Title: Strigolactone signaling in plants
Marek Marzec (2019)
Strigolactones - Biology and Applications
H. Koltai (2019)
Chemical Potential-Induced Wall State Transitions in Plant Cell Growth
M. Pietruszka (2019)
Strigolactone-nitric oxide interplay in plants: The story has just begun.
Z. Kolbert (2019)
Strigolactones and their crosstalk with other phytohormones.
L. O. Omoarelojie (2019)
Comparing and Contrasting the Multiple Roles of Butenolide Plant Growth Regulators: Strigolactones and Karrikins in Plant Development and Adaptation to Abiotic Stresses
Tao Yang (2019)
The role of strigolactones in plant-microbe interactions
S. Rochange (2019)
Gibberellin repression of axillary bud formation in Arabidopsis by modulation of DELLA-SPL9 complex activity.
Qiqi Zhang (2019)
Strigolactones Promote Leaf Elongation in Tall Fescue through Upregulation of Cell Cycle Genes and Downregulation of Auxin Transport Genes in Tall Fescue under Different Temperature Regimes
Qiannan Hu (2019)
Strigolactone-Based Node-to-Bud Signaling May Restrain Shoot Branching in Hybrid Aspen
Niveditha Umesh Katyayini (2019)
Orobanche menace in crop plants: Host resistance as a potential tool to control
K. Baghyalakshmi (2019)
GCTTCA as a novel motif for regulating mesocarp-specific expression of the oil palm (Elaeis guineensis Jacq.) stearoyl-ACP desaturase gene
Farah Hanan Abu Hanifiah (2018)
Strigolactones in plant adaptation to abiotic stresses: An emerging avenue of plant research.
M. Mostofa (2018)
Strigolactones: multi-level regulation of biosynthesis and diverse responses in plant abiotic stresses
Aditya Banerjee (2018)
Regulation of Root Development and Architecture by Strigolactones under Optimal and Nutrient Deficiency Conditions
M. Marzec (2018)
Key Hormonal Components Regulate Agronomically Important Traits in Barley
M. Marzec (2018)
Abscisic acid influences tillering by modulation of strigolactones in barley
Hongwen Wang (2018)
Chapter 5 Strigolactone Signaling in Plants
M. Marzec (2018)
How to obtain cell volume from dynamic pH, temperature and pressure in plants
M. Pietruszka (2018)
Strigolactones in the Rhizosphere: Friend or Foe?
Carolien De Cuyper (2017)
Strigolactones Biosynthesis and Their Role in Abiotic Stress Resilience in Plants: A Critical Review
Wajeeha Saeed (2017)
Strigolactones and Gibberellins: A New Couple in the Phytohormone World?
M. Marzec (2017)See more